New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 2330175	46 (0.190)	28 (0.120)	2/198	29.6	0.36	intergenic (+150/+162)	RCAP_rcc02161/mrcA	hypothetical protein/penicillin‑binding protein 1A
	?	NC_014034	= 2995639	53 (0.220)					intergenic (+179/+41)	RCAP_rcc02802/RCAP_rcc02803	membrane dipeptidase/hypothetical protein
Rejected: Position hash score below cutoff.

GGCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.G....................................................................................................  >  NC_014034/2330076‑2330175 .....................................................................................................GGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCAGGGCGCTGGGCCGCCGACGGGTTGCGGGGCGGCAACCGAAGGGGTTTTCCTTG  <  NC_014034/2995639‑2995540                                                                                                                                                                                                            GGCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGGCCC.CGGG.GG                                                                                                     >  1:1126590/1‑101 (MQ=0)  GCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGG.GGG                                                                                                    >  2:4251068/1‑101 (MQ=1)   CTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGG                                                                                                   >  1:4684641/1‑101 (MQ=1)    TTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGg                                                                                                  >  2:4047545/1‑100 (MQ=1)    TTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGg                                                                                                  >  1:4153193/1‑100 (MQ=1)     TGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGgg                                                                                                 >  1:1180639/1‑99 (MQ=1)     TGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGgc                                                                                                 <  1:21854/101‑3 (MQ=1)     TGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGgc                                                                                                 >  1:564971/1‑99 (MQ=1)      GGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCCGGGGC.GGGGgg                                                                                                 >  2:1833358/1‑99 (MQ=0)        CCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGGTCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGgctcc                                                                                              <  1:771653/101‑6 (MQ=1)        CCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGgctcc                                                                                              <  2:572004/101‑6 (MQ=1)        CCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGgctcc                                                                                              <  1:1201483/101‑6 (MQ=1)        CCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGgctcc                                                                                              <  2:3711830/101‑6 (MQ=1)        CCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.GGGGgctcc                                                                                              <  1:4081553/101‑6 (MQ=1)         CTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGG.GGGGgggccc                                                                                             >  1:4793234/1‑95 (MQ=0)           CCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGG.GGGGggggggcg                                                                                           >  2:4254407/1‑93 (MQ=0)              CCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCGCCCCC                                                                                         <  1:905673/101‑1 (MQ=1)              CCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCGCCCCC                                                                                         <  2:1686544/101‑1 (MQ=1)              CCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCGCCCCC                                                                                         <  2:4748093/101‑1 (MQ=1)              CCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCGCCCCC                                                                                         <  2:2559844/101‑1 (MQ=1)              CCAAGGGCGGCAACGGCGCGCAGAGCCCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCGCCCCC                                                                                         <  2:741082/101‑1 (MQ=1)                AAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCGCCCCCgc                                                                                       >  2:3131150/1‑99 (MQ=1)                AAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCGCCCCCgc                                                                                       >  2:4562056/1‑99 (MQ=1)                AAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCGCCCCCgc                                                                                       >  2:1953783/1‑99 (MQ=1)                     CGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCG.CCCCCGCACCCC                                                                                 <  1:4154730/101‑1 (MQ=1)                     CGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCG.CCCCCGCACCCC                                                                                 <  1:4251385/101‑1 (MQ=1)                      GGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCG.CCCCCGCACCCCC                                                                                <  2:2863140/101‑1 (MQ=1)                      GGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGCGGGGGCTCCG.CCCCCGCACCCCC                                                                                <  2:4462890/101‑1 (MQ=1)                                                                                                                                                                                                            GGCTTGGCCTCCGCCAAGGGCGGCAACGGCGCGCAGAGCGCCGCACGGATCGGCCGATGGCGGAGAGGAATTTCGCCGCGCAGGCGCGGCGACCC.GGGC.G....................................................................................................  >  NC_014034/2330076‑2330175 .....................................................................................................GGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCAGGGCGCTGGGCCGCCGACGGGTTGCGGGGCGGCAACCGAAGGGGTTTTCCTTG  <  NC_014034/2995639‑2995540 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG