New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 2467392 =198 (0.850)2 (0.010) 2/190 29.0 0.01 coding (416/1764 nt) RCAP_rcc02292 signal transduction histidine kinase
?NC_014034 = 3530238 217 (0.890)coding (1610/1623 nt) aceB malate synthase
Rejected: Position hash score below cutoff.

AAAGCCGATCAGCCGCCCGGCATTATCGGTGACAGGCAGCGACAGGTTCAGGATCGAGGTCCCCGACAGCGGGCCGTCCCGGTTCACGGTCAGCTTCGGGCGCG....................................................................................................  <  NC_014034/2467495‑2467392
...................................................................................................GCGCGTTCAAAACCGCATAGGCGGCGGTGGTAAGGAAATCGGGCAGGGTTTCGGCGGTCACGGCTTCCAGCAGCAGCCGTGCGGCGGTGGCGTAATGGCCGCGGT  <  NC_014034/3530238‑3530139
                                                                                                                                                                                                            
                                CAGGCAGCGACAGGTTCAGGATCGAGGTCCCCGACAGCGGGCCGTCCCGGTTCACGGTCAGCTTCGGGCGCGTTCAAAACCGCATAGGCGGCGGTGGTAAG                                                                         >  1:1549149/1‑101 (MQ=255)
                                        GACAGGTTCAGGATCGAGGTCCCCGACAGCGGGCCGTCCCGGTTCACGGTCAGCTTCGGGCGCGTTCAAAACCGCATAGGCGGCGGTGGTAAGGAAATCGG                                                                 <  2:1549019/101‑1 (MQ=255)
                                                                                                                                                                                                            
AAAGCCGATCAGCCGCCCGGCATTATCGGTGACAGGCAGCGACAGGTTCAGGATCGAGGTCCCCGACAGCGGGCCGTCCCGGTTCACGGTCAGCTTCGGGCGCG....................................................................................................  <  NC_014034/2467495‑2467392
...................................................................................................GCGCGTTCAAAACCGCATAGGCGGCGGTGGTAAGGAAATCGGGCAGGGTTTCGGCGGTCACGGCTTCCAGCAGCAGCCGTGCGGCGGTGGCGTAATGGCCGCGGT  <  NC_014034/3530238‑3530139

Base quality scores:  ATCG  < 3 ≤  ATCG  < 27 ≤  ATCG  < 32 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG