New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 2599754 =216 (0.970)2 (0.010) 2/182 28.4 0.01 coding (275/1737 nt) RCAP_rcc02423 ABC transporter ATP‑binding protein/permease
?NC_014034 3331855 = 273 (1.110)coding (816/1962 nt) ccmF cytochrome c‑type biogenesis protein CcmF
Rejected: Position hash score below cutoff.

ATGCCTGGAACCAGCCCTTTTACGACGCGCTGACGCGCAAGGATTTCCCCGCCTTCGTGGTGCAGCTGGGGGTCTTTGCGGTTCTGGCGGGGGGGCTTCTGGCGCTGAA....................................................................................................  <  NC_014034/2599862‑2599754
....................................................................................................GGCGCTGAAAAGCTGGACGATCCTGCTCGCCATCATGGCCTTCGGCTTTTCGCTGATCGGCACGTTCCTGGTGCGGTCCGGGGTGATTTCCTCGGTGCACAGTTTCGCC  >  NC_014034/3331855‑3331954
                                                                                                                                                                                                                 
                                   ctCAAGGATTTCCCCGCCTTCGTGGTGCAGCTGGGGGTCTTTGCGGTTCTGGCGGGGGGGCTTCTGGCGCTGAAAAGCTGGACGATCCTGCTCGCCATCAT                                                                           <  2:1703025/99‑1 (MQ=255)
                                     CAAGGATTTCCCCGCCTTCGTGGTGCAGCTGGGGGTCTTTGCGGTTCTGGCGGGGGGGCTTCTGGCGCTGAAAAGCTGGACGATCCTGCTCGCCATCATag                                                                         >  1:1703155/1‑99 (MQ=255)
                                                                                                                                                                                                                 
ATGCCTGGAACCAGCCCTTTTACGACGCGCTGACGCGCAAGGATTTCCCCGCCTTCGTGGTGCAGCTGGGGGTCTTTGCGGTTCTGGCGGGGGGGCTTCTGGCGCTGAA....................................................................................................  <  NC_014034/2599862‑2599754
....................................................................................................GGCGCTGAAAAGCTGGACGATCCTGCTCGCCATCATGGCCTTCGGCTTTTCGCTGATCGGCACGTTCCTGGTGCGGTCCGGGGTGATTTCCTCGGTGCACAGTTTCGCC  >  NC_014034/3331855‑3331954

Base quality scores:  ATCG  < 3 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG