New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 2600949	0 (0.000)	78 (0.340)	13/190	20.7	0.35	intergenic (+11/‑130)	RCAP_rcc02424/surE	short‑chain dehydrogenase/reductase family oxidoreductase/5'‑nucleotidase SurE
	?	NC_014034	3609076 =	288 (1.180)					intergenic (+15/‑156)	clpB/dinB	chaperone ClpB/DNA polymerase IV
Rejected: Position hash score below cutoff.

CACCGCCGTGCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGG.....................................  >  NC_014034/2600845‑2600949 ....................................................................................................GGGGGCTCTGCCCCC..GCTTCGCTCCCCCCGGGATATTTGG  >  NC_014034/3609076‑3609110                                                                                                                                                      CGTGCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCT                                     >  2:4510129/1‑101 (MQ=1)        GTGCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTC                                    >  2:3228303/1‑101 (MQ=1)        GTGCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTC                                    <  2:1632264/101‑1 (MQ=1)        GTGCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTC                                    <  1:2123407/101‑1 (MQ=1)         TGCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCT                                   <  1:2750580/101‑1 (MQ=1)         TGCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCT                                   <  1:123819/101‑1 (MQ=1)         TGCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCT                                   <  1:1314048/101‑1 (MQ=1)          GCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTG                                  <  1:2959394/101‑1 (MQ=1)          GCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGAGCTCTG                                  >  1:4192053/1‑101 (MQ=1)           CGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGC                                 <  2:2037156/101‑1 (MQ=1)            GGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTTCCGAGATCTGACGGACGGGGGGCTCTGCC                                >  1:2059438/1‑101 (MQ=1)            GGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCC                                <  1:520001/101‑1 (MQ=1)            GGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCC                                <  1:1945811/101‑1 (MQ=1)             GGCGCTCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCC                               <  1:533323/101‑1 (MQ=1)             GGCGCGCTTCTTCCGGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCC                               <  2:1432504/101‑1 (MQ=1)             GGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCC                               <  1:545602/101‑1 (MQ=1)              GCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCC                              <  1:3066427/101‑1 (MQ=1)              GCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCC                              <  2:2837352/101‑1 (MQ=1)               CGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGGGCTGCCCCC                             >  1:538722/1‑101 (MQ=1)               CGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCC                             >  1:1843810/1‑101 (MQ=1)               CGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCC                             <  1:317925/101‑1 (MQ=1)                GCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCc                            <  1:4510449/101‑2 (MQ=1)                GCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCc                            <  1:636577/101‑2 (MQ=1)                 CGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcg                           <  2:1312548/101‑3 (MQ=1)                 CGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcg                           <  2:2749165/101‑3 (MQ=1)                 CGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGACCCCcg                           >  2:4576550/1‑99 (MQ=1)                 CGCTTCTGCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcg                           <  2:2872704/101‑3 (MQ=1)                  GCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcgg                          >  2:2286313/1‑98 (MQ=1)                    TTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcggct                        <  2:2256647/101‑6 (MQ=1)                     TCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcggctt                       <  2:4028932/101‑7 (MQ=1)                     TCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcggctt                       >  2:3107630/1‑95 (MQ=1)                     TCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcggctt                       >  2:1302046/1‑95 (MQ=1)                     TCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcggctt                       <  1:3009745/101‑7 (MQ=1)                     TCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcggctt                       >  1:2590024/1‑95 (MQ=1)                      CTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcggcttc                      <  1:780382/101‑8 (MQ=1)                      CTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcggcttc                      <  2:1065042/101‑8 (MQ=1)                      CTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcggcttc                      <  2:2408782/101‑8 (MQ=1)                      CTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcggcttc                      >  2:2912739/1‑94 (MQ=1)                      CTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcggcttc                      <  1:158862/101‑8 (MQ=1)                      CTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcggcttc                      <  1:3001714/101‑8 (MQ=1)                       TTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcggcttcg                     <  1:2942110/101‑9 (MQ=1)                       TTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCcggcttcg                     <  1:55933/101‑9 (MQ=1)                         CCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCT                   <  1:4968559/101‑1 (MQ=1)                          CCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTC                  >  2:360572/1‑101 (MQ=1)                              CCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCC              <  1:3799333/101‑1 (MQ=1)                              CCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCC              >  1:4109975/1‑101 (MQ=1)                               CGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCC             <  2:60189/101‑1 (MQ=1)                               CGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCC             <  1:4160956/101‑1 (MQ=1)                               CGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCC             >  2:3515951/1‑101 (MQ=1)                                GAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCG            >  1:880795/1‑101 (MQ=1)                                GAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCG            >  1:3619131/1‑101 (MQ=1)                                GAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCG            <  1:1302167/101‑1 (MQ=1)                                 AGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGG           <  1:2781975/101‑1 (MQ=1)                                 AGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGG           >  2:4846764/1‑101 (MQ=1)                                  GGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGG          >  1:3529405/1‑101 (MQ=1)                                   GACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGA         >  1:3532753/1‑101 (MQ=1)                                    gCCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGAT        <  2:2448018/100‑1 (MQ=1)                                    ACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGAT        <  2:1735394/101‑1 (MQ=1)                                    ACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGAT        >  1:3117955/1‑101 (MQ=1)                                    ACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGAT        <  1:4509167/101‑1 (MQ=1)                                      CGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGATAT      <  2:238087/101‑1 (MQ=1)                                      CGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGATAT      <  1:67603/101‑1 (MQ=1)                                       GCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGATATT     <  2:5037264/101‑1 (MQ=1)                                       GCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGATATT     >  2:780970/1‑101 (MQ=1)                                       GCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGATATT     <  1:881788/101‑1 (MQ=1)                                        CACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGATATTT    <  1:457692/101‑1 (MQ=1)                                        CACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGATATTT    <  1:4092611/101‑1 (MQ=1)                                        CACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGATATTT    <  1:4050447/101‑1 (MQ=1)                                        CACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGATATTT    <  2:4390/101‑1 (MQ=1)                                        CACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGATATTT    >  1:1629326/1‑101 (MQ=1)                                        CACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGATATTT    <  1:1463912/101‑1 (MQ=1)                                         cCGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGATATTTG   <  2:4312697/100‑1 (MQ=1)                                         ACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGATATTTG   <  2:1255796/101‑1 (MQ=1)                                         ACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGATATTTG   <  2:3435836/101‑1 (MQ=1)                                         ACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGATATTTG   <  1:1621347/101‑1 (MQ=1)                                         ACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGATATTTG   <  1:1124024/101‑1 (MQ=1)                                          CGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGATATTTGc  <  1:3999335/101‑2 (MQ=1)                                          CGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGCTCTGCCCCCCGGCTTCGCTCCCCCCGGGATATTTGc  <  1:1513647/101‑2 (MQ=1)                                                                                                                                                CACCGCCGTGCGGGCGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGG.....................................  >  NC_014034/2600845‑2600949 ....................................................................................................GGGGGCTCTGCCCCC..GCTTCGCTCCCCCCGGGATATTTGG  >  NC_014034/3609076‑3609110 Base quality scores:  ATCG  < 3 ≤  ATCG  < 23 ≤  ATCG  < 30 ≤  ATCG  < 34 ≤  ATCG  < 39 ≤  ATCG