New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	2600952 =	0 (0.000)	57 (0.240)	13/192	20.8	0.33	intergenic (+14/‑127)	RCAP_rcc02424/surE	short‑chain dehydrogenase/reductase family oxidoreductase/5'‑nucleotidase SurE
	?	NC_014034	3003969 =	235 (0.960)					intergenic (+15/+161)	gfo/lrp	glucose‑‑fructose oxidoreductase/leucine‑responsive regulatory protein
Rejected: Position hash score below cutoff.

GTCTGATTAGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGG....................................................................................................  <  NC_014034/2601055‑2600952 ....................................................................................................GGGGGCGCTGCCCCCCTCTTGGCCTGACGGCCAATTCACCCCCCGGGATATTTGGACCAAGGTGAAAGCAGATCCCGGTTTGCCTTTCACCTTGGCGCAAATAT  >  NC_014034/3003969‑3004068                                                                                                                                                                                                                  GATTAGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGGCGGGGG                                                                                                     >  1:3585640/1‑101 (MQ=0)     GATTAGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGG                                                                                                     >  1:1221601/1‑101 (MQ=1)     GATTAGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGG                                                                                                     >  2:4109658/1‑101 (MQ=1)     GATTAGCCGCCGCGCCGCAGCCAAACAAGAAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGG                                                                                                     <  2:4140367/101‑1 (MQ=0)      ATTAGCCGCTGCGCTGCATCAAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGC                                                                                                    <  2:3363573/101‑1 (MQ=0)      ATTAGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGC                                                                                                    >  2:2077595/1‑101 (MQ=1)        TAGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCCGGCGGggg                                                                                                  >  2:4055246/1‑98 (MQ=2)         AGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCGGGGGGGGCg                                                                                                 >  2:4597380/1‑100 (MQ=2)         AGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCCGGGGGGGCg                                                                                                 >  2:4029375/1‑100 (MQ=2)         AGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGgggg                                                                                                 >  1:3797566/1‑97 (MQ=11)         AGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGGGCc                                                                                                 >  1:4597049/1‑100 (MQ=1)         AGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCT                                                                                                 <  1:3824307/101‑1 (MQ=1)         AGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCT                                                                                                 <  2:2141541/101‑1 (MQ=1)          GCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCgg                                                                                                >  1:359671/1‑99 (MQ=1)           CCGCTGCCCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGC                                                                                               <  2:1839293/101‑1 (MQ=1)            CGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCC                                                                                              <  1:1833766/101‑1 (MQ=1)            CGCGGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGCTCCGGCGGGGCAGGGGGCGCcgtc                                                                                              >  2:4999188/1‑97 (MQ=9)             GCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGGGCTGGCC                                                                                             >  1:3143250/1‑101 (MQ=0)             GCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGGGCGGCCC                                                                                             >  2:4785989/1‑101 (MQ=0)             GCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCC                                                                                             <  2:554659/101‑1 (MQ=1)             GCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCC                                                                                             >  2:3268309/1‑101 (MQ=1)              cggccCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCC                                                                                            <  1:731060/96‑1 (MQ=1)              CTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCC                                                                                            >  2:2624251/1‑101 (MQ=1)              CTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCC                                                                                            <  1:4677568/101‑1 (MQ=1)              CTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCC                                                                                            <  2:579613/101‑1 (MQ=1)              CTGCCCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCC                                                                                            <  1:2014840/101‑1 (MQ=1)                GCGCCGCGGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCt                                                                                          <  1:4617976/101‑2 (MQ=1)                GCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGGCGCCCCCC                                                                                          >  1:1873920/1‑101 (MQ=14)                GCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCCGGCCCCt                                                                                          >  2:585603/1‑100 (MQ=17)                 ccCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCtc                                                                                         <  1:2970212/99‑3 (MQ=1)                  ccccgcaCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCtct                                                                                        <  2:4242424/94‑4 (MQ=0)                  GCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGGGGTGCCCCCCct                                                                                        >  2:3651304/1‑99 (MQ=0)                  GCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCCct                                                                                        >  2:1411508/1‑99 (MQ=1)                   CCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCtctt                                                                                       <  2:376119/101‑5 (MQ=1)                   CCGCACCAAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTGCCCCCtctt                                                                                       <  1:4236446/101‑5 (MQ=0)                    CGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTG.CCCCCTCTTG                                                                                     <  1:723345/101‑1 (MQ=1)                    CGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTG.CCCCCTCTTG                                                                                     <  1:3757949/101‑1 (MQ=1)                    CGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTG.CCCCCTCTTG                                                                                     <  1:2755523/101‑1 (MQ=1)                    CGCAGCCAAAAAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTG.CCCCCTCTTG                                                                                     <  1:1141297/101‑1 (MQ=1)                      CAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGGGCTG.CCCCCTCTTGGC                                                                                   >  2:829121/1‑101 (MQ=14)                      CAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTG.CCCCCTCTTGGC                                                                                   <  1:1617845/101‑1 (MQ=31)                      CAGCCAAAAAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTG.CCCCCTCTTGGC                                                                                   <  2:573103/101‑1 (MQ=14)                       AGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGGGCCG.CCCCCTCTTGGCC                                                                                  >  2:4989177/1‑101 (MQ=0)                       AGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCGGCCCCCC.CTTGGCC                                                                                  >  1:4698104/1‑101 (MQ=9)                       AGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGCGGGCGCTG.CCCCCTCTTGGCC                                                                                  <  1:2871104/101‑1 (MQ=17)                         CCAAAAAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTG.CCCCCTCTTGGCCTt                                                                                <  2:2969179/101‑2 (MQ=18)                          CAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTG.CCCCCTCTTGGCCTtt                                                                               <  1:4685308/101‑3 (MQ=34)                          CAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTG.CCCCCTCTTGGCCTtt                                                                               <  1:639291/101‑3 (MQ=34)                          CAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTG.CCCCCTCTTGGCCTtt                                                                               >  1:1470427/1‑99 (MQ=34)                           AAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTG.CCCCCTCTTGGCCTttg                                                                              <  1:3001243/101‑4 (MQ=35)                           AAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTG.CCCCCTCTTGGCCTttg                                                                              <  2:1961204/101‑4 (MQ=35)                            AACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTG.CCCCCTCTTGGCCTttgg                                                                             <  1:4384904/101‑5 (MQ=37)                            AACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTG.CCCCCTCTTGGCCTttgg                                                                             <  2:4769652/101‑5 (MQ=37)                            AACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTG.CCCCCTCTTGGCCTttgg                                                                             >  2:1954699/1‑97 (MQ=37)                             ACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTG.CCCCCTCTTGGCCTttggc                                                                            <  2:1948031/101‑6 (MQ=38)                              CAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTG.CCCCCTCTTGGCCTttggcc                                                                           <  1:2006728/101‑7 (MQ=39)                              CAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGGGCGCTG.CCCCCTCTTGGCCTttggcc                                                                           <  1:1162673/101‑7 (MQ=39)                                                                                                                                                                                                              GTCTGATTAGCCGCTGCGCCGCAGCCAAACAAGCAAGCCGCTGCACTTGGCGCGCAGGTGTGCCCTTGCGGACCCGGTCCGCCCCGGATCCGGCGGGGCAGGGG....................................................................................................  <  NC_014034/2601055‑2600952 ....................................................................................................GGGGGCGCTGCCCCCCTCTTGGCCTGACGGCCAATTCACCCCCCGGGATATTTGGACCAAGGTGAAAGCAGATCCCGGTTTGCCTTTCACCTTGGCGCAAATAT  >  NC_014034/3003969‑3004068 Base quality scores:  ATCG  < 3 ≤  ATCG  < 19 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG