New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 2674898222 (0.930)2 (0.010) 2/194 29.3 0.01 coding (646/774 nt) RCAP_rcc02491 GntR family transcriptional regulator
?NC_014034 = 3523199 197 (0.800)coding (115/1227 nt) ubiF 2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol hydroxylase
Rejected: Position hash score below cutoff.

GCGAGGCGCTGCTGGAGCAGCACCGGGCGATCAACGCGGCGATTCAGGCGCGCGACGGCTTTG...........................................................................  >  NC_014034/2674836‑2674898
..................................................................GCGCGGGGGCGGCGTCGATCACGGTGACGGAAAGGCCCGCGCCCGCAAGGGCAAGGGCAAGCGCGGGGCCAT  <  NC_014034/3523199‑3523128
                                                               |||                                                                        
GCGAGGCGCTGCTGGAGCAGCACCGGGCGATCAACGCGGCGATTCAGGCGCGCGACGGCTTT.GCCGCGCGGGGGCGGCGTCGATCACGGTGACGGAAAGGC                                      >  1:3745450/1‑101 (MQ=255)
                                    CGGCGATTCAGGCGCGCGACGGCTTT.GCCGCGCGGGGGCGGCGTCGATCACGGTGACGGAAAGGCCCGCGCCCGCAAGGGCAAGGGCAAGCGCGGGGCCAT  <  2:3745172/101‑1 (MQ=255)
                                                               |||                                                                        
GCGAGGCGCTGCTGGAGCAGCACCGGGCGATCAACGCGGCGATTCAGGCGCGCGACGGCTTTG...........................................................................  >  NC_014034/2674836‑2674898
..................................................................GCGCGGGGGCGGCGTCGATCACGGTGACGGAAAGGCCCGCGCCCGCAAGGGCAAGGGCAAGCGCGGGGCCAT  <  NC_014034/3523199‑3523128

Base quality scores:  ATCG  < 3 ≤  ATCG  < 32 ≤  ATCG  < 33 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG