New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 2802232 =211 (0.940)2 (0.010) 2/184 28.6 0.01 coding (1178/1416 nt) RCAP_rcc02613 chitin deacetylase
?NC_014034 3645533 = 199 (0.810)coding (89/825 nt) RCAP_rcc03443 BadF/BadG/BcrA/BcrD family ATPase
Rejected: Position hash score below cutoff.

CCTTCACCGCGATGATGAAGGGGAAGCCGAATTTTTCGGTGTAATCGTGGTTGAGCTCCTCAAATGCCACCCGTTCGGCATCGGTCAGCGCATCGAGCCCGGCCGAGG....................................................................................................  <  NC_014034/2802339‑2802232
....................................................................................................GGCCGAGGGCGGTCCCGCAAATATCGCCACGGATTTTGCGGCGGCGCTGGAAAGCCTGCGCGGGCTGGCGCTGCGGCTGATCGCGGACCGGCCGCCGGAACAGGTGCG  >  NC_014034/3645533‑3645632
                                                                                                                                                                                                                
                                              GTGGTTGAGCTCCTCAAATGCCACCCGTTCGGCATCGGTCAGCGCATCGAGCCCGGCCGAGGGCGGTCCCGCAAATATCGCCACGGATTTTGCGGCGGCGC                                                               >  1:2422032/1‑101 (MQ=255)
                                                            CAAATGCCACCCGTTCGGCATCGGTCAGCGCATCGAGCCCGGCCGAGGGCGGTCCCGCAAATATCGCCACGGATTTTGCGGCGGCGCTGGAAAGCCTGCGC                                                 <  2:2421858/101‑1 (MQ=255)
                                                                                                                                                                                                                
CCTTCACCGCGATGATGAAGGGGAAGCCGAATTTTTCGGTGTAATCGTGGTTGAGCTCCTCAAATGCCACCCGTTCGGCATCGGTCAGCGCATCGAGCCCGGCCGAGG....................................................................................................  <  NC_014034/2802339‑2802232
....................................................................................................GGCCGAGGGCGGTCCCGCAAATATCGCCACGGATTTTGCGGCGGCGCTGGAAAGCCTGCGCGGGCTGGCGCTGCGGCTGATCGCGGACCGGCCGCCGGAACAGGTGCG  >  NC_014034/3645533‑3645632

Base quality scores:  ATCG  < 3 ≤  ATCG  < 31 ≤  ATCG  < 33 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG