New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	2995498 =	92 (0.400)	58 (0.250)	17/188	18.5	0.42	intergenic (+38/+182)	RCAP_rcc02802/RCAP_rcc02803	membrane dipeptidase/hypothetical protein
	?	NC_014034	= 3701428	70 (0.290)					intergenic (+5/+44)	grpE/mutS	GrpE protein/DNA mismatch repair protein MutS
Rejected: Position hash score below cutoff.

AAGGAAAAGCAGGGCGCTGGGCCGCCGACGGGTTGCGGGGCGGCAACCGAAGGGGTTTTCCTTGGCAAAATACGCCTCTTGGGGGTCCGGGGGCGAAGCCCCCGGC....................................................................................................  <  NC_014034/2995603‑2995498 ....................................................................................................CCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCTGAATGATGTCAC  <  NC_014034/3701428‑3701329                                                                                                                                                                                                                                                                                     gaaaatatccTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCA                                      >  2:3290313/11‑101 (MQ=25)                                                                        aaatatccTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGC                                    >  2:1557447/9‑101 (MQ=35)                                                                         aatatccTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCATCAGACGGTCGTGCAGCA                                   >  2:4536914/8‑101 (MQ=25)                                                                         aatatccTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCA                                   >  1:1500995/8‑101 (MQ=35)                                                                          atatccTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAG                                  >  1:3897030/7‑101 (MQ=35)                                                                          atatccTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAG                                  >  2:4400002/7‑101 (MQ=35)                                                                          atatccTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAG                                  >  2:3030966/7‑101 (MQ=35)                                                                          atatccTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAG                                  >  2:4766971/7‑101 (MQ=35)                                                                          atatccTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAG                                  >  1:2428371/7‑101 (MQ=35)                                                                           tatccTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGG                                 >  2:1821155/6‑101 (MQ=34)                                                                            atccTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTGGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGA                                >  2:3727261/5‑101 (MQ=18)                                                                            atccTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGA                                >  1:2526983/5‑101 (MQ=33)                                                                            atccTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGA                                >  1:1666258/5‑101 (MQ=33)                                                                            atccTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGA                                >  2:1325094/5‑101 (MQ=33)                                                                            atccTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGCCGTGCAGCAGGA                                >  1:2762583/5‑101 (MQ=18)                                                                             tccTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAA                               >  2:4352384/4‑101 (MQ=32)                                                                             tccTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAA                               >  2:2747137/4‑101 (MQ=32)                                                                              ccTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAG                              >  2:3211836/3‑101 (MQ=31)                                                                              ccTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAG                              >  1:2992265/3‑101 (MQ=31)                                                                              ccTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAG                              >  1:1941460/3‑101 (MQ=31)                                                                               cTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGC                             >  2:2866878/2‑101 (MQ=11)                                                                               cTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGC                             >  2:2422605/2‑101 (MQ=11)                                                                                TGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCC                            >  1:4535577/1‑101 (MQ=1)                                                                                TGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCC                            >  1:380217/1‑101 (MQ=1)                                                                                TGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCC                            >  1:2830951/1‑101 (MQ=1)                                                                                 GGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCG                           >  2:3352923/1‑101 (MQ=1)                                                                                 GGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCG                           >  2:4519270/1‑101 (MQ=1)                                                                                 GGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCG                           >  2:2823811/1‑101 (MQ=1)                                                                                 GGGGGGCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCG                           >  2:4991893/1‑101 (MQ=1)                                                                                  GGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGT                          >  1:3607261/1‑101 (MQ=1)                                                                                   GGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTC                         >  2:1294872/1‑101 (MQ=1)                                                                                    GGTCCGGGGGCTAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCTGTACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCG                        >  1:1582834/1‑101 (MQ=0)                                                                                    GGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCG                        >  2:862315/1‑101 (MQ=1)                                                                                     GTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGT                       >  1:3368516/1‑101 (MQ=1)                                                                                       CCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCC                     >  2:2424408/1‑101 (MQ=1)                                                                                       CCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCC                     >  2:1955635/1‑101 (MQ=1)                                                                                       CCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCC                     >  2:1616153/1‑101 (MQ=1)                                                                                       CCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCC                     >  2:4099789/1‑101 (MQ=1)                                                                                        CGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCA                    >  2:2320357/1‑101 (MQ=1)                                                                                        CGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCA                    >  1:3240742/1‑101 (MQ=1)                                                                                        CGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCA                    >  2:2738008/1‑101 (MQ=1)                                                                                         GGGGGCGAAGCCGCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCAT                   >  1:2740631/1‑101 (MQ=1)                                                                                         GGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCAT                   >  1:1834576/1‑101 (MQ=1)                                                                                           cgccccccCCCCCGCCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCA                 <  1:842455/93‑1 (MQ=0)                                                                                           GGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCA                 >  1:3981109/1‑101 (MQ=1)                                                                                              CGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCT              >  1:4441374/1‑101 (MQ=1)                                                                                              CGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCT              >  1:3465006/1‑101 (MQ=1)                                                                                              CGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCT              >  2:2629450/1‑101 (MQ=1)                                                                                               GAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCTG             <  2:3980807/101‑1 (MQ=1)                                                                                               GAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCTG             >  2:2226314/1‑101 (MQ=1)                                                                                               GAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCTG             >  1:1281306/1‑101 (MQ=1)                                                                                               GAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGGCGGGCAGCAGGAAGCCGTCGTCCATCACCTG             >  2:1587257/1‑101 (MQ=0)                                                                                                AAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCGGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCTGA            >  2:2579048/1‑101 (MQ=1)                                                                                                AAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCTGA            >  2:3869473/1‑101 (MQ=1)                                                                                                 ccCCCCCCCCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCTGAA           <  2:3870768/99‑1 (MQ=0)                                                                                                  cCCCCCCCCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCTGAAT          <  2:1134686/100‑1 (MQ=0)                                                                                                  cCCCCCCCCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCTGAAT          <  2:1156210/100‑1 (MQ=0)                                                                                                   CCCCCCCCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCTGAATG         <  2:2428197/101‑1 (MQ=0)                                                                                                                                                                                                                AAGGAAAAGCAGGGCGCTGGGCCGCCGACGGGTTGCGGGGCGGCAACCGAAGGGGTTTTCCTTGGCAAAATACGCCTCTTGGGGGTCCGGGGGCGAAGCCCCCGGC....................................................................................................  <  NC_014034/2995603‑2995498 ....................................................................................................CCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCTGAATGATGTCAC  <  NC_014034/3701428‑3701329 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG