New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	3511409 =	249 (1.130)	2 (0.010)	2/180	28.3	0.01	coding (33/2118 nt)	spoT	GTP diphosphokinase/guanosine‑3',5'‑bis(diphosphate) 3'‑pyrophosphohydrolase
	?	NC_014034	3511453 =	256 (1.050)					intergenic (‑12/+8)	spoT/rpoZ	GTP diphosphokinase/guanosine‑3',5'‑bis(diphosphate) 3'‑pyrophosphohydrolase/DNA‑directed RNA polymerase omega subunit
Rejected: Position hash score below cutoff.

TGACATGGACGAAGAGCGCATGCTGCGCGCATTGATGGACGCGCAAGGCCGCGACTGAACGAGGGTAACGAGCGCGGATGATCGATGTCGAAGACCTGATCGCGCTCGTT....................................................................................................  <  NC_014034/3511518‑3511409 ....................................................................................................CGCGCTCGTTACCCTCGTTCAGTCGCGGCCTTGCGCGTCCATCAATGCGCGCAGCATGCGCTCTTCGTCCATGTCATCGACGCGCGGCCGGTCGATCTCGCCCGACATCA  >  NC_014034/3511453‑3511552                                                                                                                                                                                                                                                                                         GAGCGCGGATGATCGATGTCGAAGACCTGATCGCGCTCGTTACCCTCGTTCAGTCGCGGCCTTGCGCGTCCATCAATGCGCGCAGCATGCGCTCTTCGTCC                                          >  2:2977466/1‑101 (MQ=255)                                                                              ATGATCGATGTCGAAGACCTGATCGCGCTCGTTACCCTCGTTCAGTCGCGGCCTTGCGCGTCCATCAATGCGCGCAGCATGCGCTCTTCGTCCATGTCATC                                  <  1:2977694/101‑1 (MQ=255)                                                                                                                                                                                                                    TGACATGGACGAAGAGCGCATGCTGCGCGCATTGATGGACGCGCAAGGCCGCGACTGAACGAGGGTAACGAGCGCGGATGATCGATGTCGAAGACCTGATCGCGCTCGTT....................................................................................................  <  NC_014034/3511518‑3511409 ....................................................................................................CGCGCTCGTTACCCTCGTTCAGTCGCGGCCTTGCGCGTCCATCAATGCGCGCAGCATGCGCTCTTCGTCCATGTCATCGACGCGCGGCCGGTCGATCTCGCCCGACATCA  >  NC_014034/3511453‑3511552 Base quality scores:  ATCG  < 3 ≤  ATCG  < 33 ≤  ATCG  < 34 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG