New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 39908275 (1.120)2 (0.010) 2/198 29.6 0.01 coding (296/1104 nt) RCAP_rcc00033 hypothetical protein
?NC_014034 = 178463 219 (0.890)coding (616/1359 nt) alsT sodium/amino acid symporter
Rejected: Position hash score below cutoff.

GTGTTGTTGAACCCGTGCACGAAAACGACGGCCTCGCCGCCGCTTTTTTTCAGGCTCTGCCGCAAAGCGGCCTGAAACGCCTCCGCCCCGGGGTATTTCT...........................................  >  NC_014034/39809‑39908
....................................................................................................G.GATCCCGCCCAGAACGACGAGCCCGGTGAGCACCGTCATCA  <  NC_014034/178463‑178422
                                                                                                                                               
GTGTTGTTGAACCCGTGCACGAAAACGACGGCCTCGCCGCCGCTTTTTTTCAGGCTCTGCCGCAAAGCGGCCTGAAACGCCTCCGCCCCGGGGTATTTCTG                                            >  1:4616952/1‑101 (MQ=255)
GTGTTGTTGAACCCGTGCACGAAAACGACGGCCTCGCCGCCGCTTTTTTTCAGGCTCTGCCGCAAAGCGGCCTGAAACGCCTCCGCCCCGGGGTATTTCTG                                            <  2:854146/101‑1 (MQ=255)
                                         GCTTTTTTTCAGGCTCTGCCGCAAAGCGGCCTGAAACGCCTCCGCCCCGGGGTATTTCTGCGATCCCGCCCAGAACGACGACCCCGGTGAGCACCGTCATC   >  1:3635644/1‑101 (MQ=255)
                                          CTTTTTTTCAGGCTCTGCCGCAAAGCGGCCTGAAACGCCTCCGCCCCGGGGTATTTCTGCGATCCCGCCCAGAACGACGACCCCGGTGAGCACCGTCATCA  <  2:3635372/101‑1 (MQ=255)
                                                                                                                                               
GTGTTGTTGAACCCGTGCACGAAAACGACGGCCTCGCCGCCGCTTTTTTTCAGGCTCTGCCGCAAAGCGGCCTGAAACGCCTCCGCCCCGGGGTATTTCT...........................................  >  NC_014034/39809‑39908
....................................................................................................G.GATCCCGCCCAGAACGACGAGCCCGGTGAGCACCGTCATCA  <  NC_014034/178463‑178422

Base quality scores:  ATCG  < 3 ≤  ATCG  < 23 ≤  ATCG  < 32 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG