New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 504736 =209 (0.890)43 (0.180) 5/192 26.2 0.25 intergenic (+9/+101) trpS/RCAP_rcc00470 tryptophanyl‑tRNA synthetase/MATE efflux family protein
?NC_014034 = 2330171 46 (0.190)intergenic (+146/+166) RCAP_rcc02161/mrcA hypothetical protein/penicillin‑binding protein 1A
Rejected: Position hash score below cutoff.

TGAGCTGCGCTCATTCACCCCCCGGGATATTTGCGGCAAGATAAAGGGGCTCGGCTTTCATCTTGCCACAAATATCCCGGGGGTGCGGGGGCAGAGCCCCCG.CC...................................................................................................  <  NC_014034/504839‑504736
....................................................................................................CG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCAAGCCGAA  <  NC_014034/2330171‑2330073
                                                                                                                                                                                                            
                                                                    CAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCG                                    >  2:725545/1‑101 (MQ=1)
                                                                    CAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCG                                    >  1:2995122/1‑101 (MQ=1)
                                                                    CAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCG                                    >  2:3496154/1‑101 (MQ=1)
                                                                     AAATACGCCGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGC                                   >  2:4919730/1‑101 (MQ=1)
                                                                     AAATACGCCGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGC                                   >  2:4447053/1‑101 (MQ=1)
                                                                     AAATACGCCGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGC                                   >  1:81999/1‑101 (MQ=1)
                                                                     AAATACGCCGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGC                                   >  1:631406/1‑101 (MQ=1)
                                                                      aatacgCCGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCG                                  >  1:669691/7‑101 (MQ=1)
                                                                        tacgCCGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCC                                >  2:90493/5‑101 (MQ=1)
                                                                        tacgCCGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCC                                >  1:1451432/5‑101 (MQ=1)
                                                                        tacgCCGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCC                                >  2:4125038/5‑101 (MQ=1)
                                                                           gCCGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTT                             >  1:4072035/2‑101 (MQ=1)
                                                                           gCCGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGGCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTT                             >  1:3402427/2‑101 (MQ=1)
                                                                             CGGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGC                           >  2:1830716/1‑101 (MQ=1)
                                                                              GGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCC                          >  2:4462890/1‑101 (MQ=1)
                                                                              GGGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCC                          >  2:2863140/1‑101 (MQ=1)
                                                                              GGGGGAGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCC                          >  1:464253/1‑101 (MQ=1)
                                                                               GGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCG                         >  1:4154730/1‑101 (MQ=1)
                                                                               GGGGTGCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCG                         >  1:4251385/1‑101 (MQ=1)
                                                                                    GCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTT                    <  2:4562056/101‑1 (MQ=1)
                                                                                    GCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTT                    <  2:3131150/101‑1 (MQ=1)
                                                                                    GCGGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTT                    <  2:1953783/101‑1 (MQ=1)
                                                                                    GCGGGGGCGCACCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTT                    <  2:494736/101‑1 (MQ=0)
                                                                                      GGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGGGCTCTGCGCGCCGTTGCCGCCCTTGG                  >  2:741082/1‑101 (MQ=1)
                                                                                      GGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGG                  >  2:4748093/1‑101 (MQ=1)
                                                                                      GGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGG                  >  2:2559844/1‑101 (MQ=1)
                                                                                      GGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGG                  >  2:1686544/1‑101 (MQ=1)
                                                                                      GGGGGCGGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGG                  >  1:905673/1‑101 (MQ=1)
                                                                                         cgcccccCCCCCC.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGG               <  2:4254407/94‑1 (MQ=0)
                                                                                           gggccCCCCCC.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAG             <  1:4793234/96‑1 (MQ=0)
                                                                                            gGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGG            >  2:3711830/2‑101 (MQ=1)
                                                                                            gGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGG            >  1:1201483/2‑101 (MQ=1)
                                                                                            gGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGG            >  2:572004/2‑101 (MQ=1)
                                                                                            gGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGG            >  1:4081553/2‑101 (MQ=1)
                                                                                            gGAGCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGACCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGG            >  1:771653/2‑101 (MQ=1)
                                                                                               cCCCCCGCCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCC          <  2:1833358/100‑1 (MQ=0)
                                                                                               cCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCA         <  1:1180639/100‑1 (MQ=1)
                                                                                               GCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCA         >  1:21854/1‑101 (MQ=1)
                                                                                               GCCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCA         <  1:564971/101‑1 (MQ=1)
                                                                                                CCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCAA        <  1:4153193/101‑1 (MQ=1)
                                                                                                CCCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCAA        <  2:4047545/101‑1 (MQ=1)
                                                                                                 CCCCG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCAAG       <  1:4684641/101‑1 (MQ=1)
                                                                                                  CCCC.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCAAGC      <  2:4251068/101‑1 (MQ=1)
                                                                                                                                                                                                            
TGAGCTGCGCTCATTCACCCCCCGGGATATTTGCGGCAAGATAAAGGGGCTCGGCTTTCATCTTGCCACAAATATCCCGGGGGTGCGGGGGCAGAGCCCCCG.CC...................................................................................................  <  NC_014034/504839‑504736
....................................................................................................CG.CCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCAAGCCGAA  <  NC_014034/2330171‑2330073

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG