New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 504822	231 (1.060)	59 (0.270)	14/178	19.2	0.28	intergenic (+95/+15)	trpS/RCAP_rcc00470	tryptophanyl‑tRNA synthetase/MATE efflux family protein
	?	NC_014034	1640006 =	69 (0.280)					intergenic (+86/‑59)	mccB/mccA	methylcrotonoyl‑CoA carboxylase subunit beta/methylcrotonoyl‑CoA carboxylase subunit alpha
Rejected: Position hash score below cutoff.

GCCCCTTTATCTTGCCGCAAATATCCCGGGGGG...............................................................................................................  >  NC_014034/504790‑504822 ............................................GCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGC  >  NC_014034/1640006‑1640105                                  |||||||||||                                                                                                     tCCCTTTCATCTTGCCCCAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCG                                             >  2:824212/2‑101 (MQ=11) tCCCTTTCATCTTGCCCCAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCG                                             >  2:526029/2‑101 (MQ=11)  CCCTTTCATCTTGCCCCAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGC                                            >  1:3600341/1‑101 (MQ=1)  CCCTTTCATCTTGCCCCAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGC                                            >  2:3767347/1‑101 (MQ=1)   cctttcATCTTGCCCCAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCG                                           >  1:262078/7‑101 (MQ=1)     tttcATCTTGCCCCAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGAT                                         >  1:2304764/5‑101 (MQ=1)      ttcATCTTGCCCCAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATG                                        >  1:5050196/4‑101 (MQ=1)      ttcATCTTGCCCCAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATG                                        >  1:4605961/4‑101 (MQ=1)      ttcATCTTGCCCCAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATG                                        >  2:4817480/4‑101 (MQ=1)       tcATCTTGCCCCAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGT                                       >  2:1231406/3‑101 (MQ=1)       tcATCTTGCCCCAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGT                                       >  1:4055126/3‑101 (MQ=1)        cATCTTGCCCCAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTT                                      >  1:2158369/2‑101 (MQ=1)         ATCTTGCCCCAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTT                                     >  1:4745977/1‑101 (MQ=1)          TCTTGCCCCAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTC                                    >  2:3767922/1‑101 (MQ=1)           CTTGCCCCAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGCCCGCGATGTTTCA                                   >  1:3713336/1‑101 (MQ=1)           CTTGCCCCAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCA                                   >  1:1392896/1‑101 (MQ=1)           CTTGCCCCAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCA                                   >  1:3373030/1‑101 (MQ=1)            TTGCCCCAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAA                                  >  1:34394/1‑101 (MQ=1)            TTGCCCCAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAA                                  >  1:395581/1‑101 (MQ=1)            TTGCCCCAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAA                                  >  2:2202895/1‑101 (MQ=1)            TTGCCCCAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAA                                  >  2:2609102/1‑101 (MQ=1)            TTGCCACAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAA                                  >  2:268856/1‑101 (MQ=32)             TGCCCCAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAA                                 >  1:90874/1‑101 (MQ=1)              GCCCCAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAA                                >  1:2966012/1‑101 (MQ=1)              GCCCCAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAA                                >  2:1133990/1‑101 (MQ=1)              GCCCCAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAA                                >  2:52350/1‑101 (MQ=1)               cccCAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCCCGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAG                               >  1:921750/4‑101 (MQ=1)                 cCAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCCCCACTTCCGCCACGGGGAAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGAT                             >  1:639245/2‑101 (MQ=0)                  CAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGCTGTTTCAAAAGCTC                            >  2:1458157/1‑101 (MQ=0)                  CAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATC                            >  1:3177635/1‑101 (MQ=1)                  CAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATC                            >  1:4346828/1‑101 (MQ=1)                  CAAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATC                            >  1:3639681/1‑101 (MQ=1)                   AAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCt                           >  1:494676/1‑100 (MQ=1)                   AAATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCC                           >  1:37101/1‑101 (MQ=1)                    AATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCT                          >  1:1001191/1‑101 (MQ=1)                     ATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTG                         >  1:3496126/1‑101 (MQ=1)                     ATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTG                         >  1:2696537/1‑101 (MQ=1)                     ATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTG                         >  1:1327630/1‑101 (MQ=1)                     ATATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGAAGACCGCGATGTTTCAAAAGATCCTG                         >  2:4831687/1‑101 (MQ=1)                      TATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGA                        >  2:2780132/1‑101 (MQ=1)                      TATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGA                        >  2:976903/1‑101 (MQ=1)                       ATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGAT                       >  1:410961/1‑101 (MQ=1)                       ATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGAT                       >  1:2740398/1‑101 (MQ=1)                       ATCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGAT                       >  1:2703832/1‑101 (MQ=1)                        TCCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATC                      >  1:1326618/1‑101 (MQ=1)                         CCCGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCG                     >  1:61646/1‑101 (MQ=1)                           CGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCC                   >  2:677817/1‑101 (MQ=1)                           CGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCC                   >  1:1394266/1‑101 (MQ=1)                           CGGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCC                   >  1:2385509/1‑101 (MQ=1)                            GGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCA                  >  1:1217184/1‑101 (MQ=1)                            GGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCA                  >  1:2325600/1‑101 (MQ=1)                            GGGGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCA                  >  2:3541815/1‑101 (MQ=1)                              GGGGCGCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAAC                >  2:1023721/1‑101 (MQ=1)                              GGGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCCCGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAAC                >  1:3590020/1‑101 (MQ=1)                               ttGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACA               >  2:4545503/3‑101 (MQ=1)                               GGGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACA               >  1:1131744/1‑101 (MQ=1)                                GGCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAG              >  2:76516/1‑101 (MQ=1)                                 GCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGG             >  2:3069833/1‑101 (MQ=1)                                 GCCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGG             >  1:2668645/1‑101 (MQ=1)                                  CCCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGG            >  2:3600615/1‑101 (MQ=1)                                   CCGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGC           >  1:1348291/1‑101 (MQ=1)                                    CGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCC          >  1:209572/1‑101 (MQ=1)                                    CGGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCC          >  2:1102064/1‑101 (MQ=1)                                     GGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCG         >  2:4598665/1‑101 (MQ=1)                                     GGGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCG         >  1:4039338/1‑101 (MQ=1)                                      GGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGA        >  1:2757361/1‑101 (MQ=1)                                      GGGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGA        >  1:3006269/1‑101 (MQ=1)                                       GGGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAG       >  1:4723963/1‑101 (MQ=1)                                        GGGCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGA      >  1:1274237/1‑101 (MQ=1)                                          GCAGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATC    >  2:4713203/1‑101 (MQ=1)                                            AGCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGC  >  1:2351030/1‑101 (MQ=1)                                  |||||||||||                                                                                                     GCCCCTTTATCTTGCCGCAAATATCCCGGGGGG...............................................................................................................  >  NC_014034/504790‑504822 ............................................GCGCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGC  >  NC_014034/1640006‑1640105 Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 23 ≤  ATCG  < 33 ≤  ATCG  < 37 ≤  ATCG