New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 530939	137 (0.610)	72 (0.320)	31/184	12.7	0.26	intergenic (+17/+124)	valS/RCAP_rcc00497	valyl‑tRNA synthetase/UbiA prenyltransferase
	?	NC_014034	3609079 =	268 (1.090)					intergenic (+18/‑153)	clpB/dinB	chaperone ClpB/DNA polymerase IV
Rejected: Position hash score below cutoff.

GATCGAGGAAGCCCGCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTC..................................  >  NC_014034/530832‑530939 ....................................................................................................GGGGGCTCT.G.CCCCCGCTTCGCTCCCCCCGGGATATTTGG  >  NC_014034/3609079‑3609110                                                                                                                                                        AAGCCCGCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT                                   <  2:3941494/101‑1 (MQ=1)          AGCCCGCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.G                                 <  1:3413751/101‑1 (MQ=1)            CCCGCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.G.CC                              <  2:1378944/101‑1 (MQ=1)             CCGCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.G.CCC                             <  1:612201/101‑1 (MQ=1)             CCGCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.G.CCC                             <  2:3619024/101‑1 (MQ=1)               GCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.G.CCCCC                           <  2:2402513/101‑1 (MQ=1)               GCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.G.CCCCC                           <  2:3252824/101‑1 (MQ=1)               GCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.G.CCCCC                           <  1:481322/101‑1 (MQ=1)               GCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.G.CCCCC                           <  2:3757445/101‑1 (MQ=1)               GCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.G.CCCCC                           <  2:367904/101‑1 (MQ=1)               GCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAAAGGGGGTCT.G.CCCCC                           >  2:677722/1‑101 (MQ=0)                CGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.G.CCCCCc                          >  2:4499771/1‑100 (MQ=11)                CGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.G.CCCCCc                          <  2:3441706/101‑2 (MQ=11)                 GAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.G.CCCCCcg                         <  2:3228748/101‑3 (MQ=31)                 GAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.G.CCCCCcg                         >  1:275657/1‑99 (MQ=31)                  AAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.G.CCCCCcgc                        >  2:3574128/1‑98 (MQ=14)                  AAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.G.CCCCCcgc                        >  1:2198575/1‑98 (MQ=14)                  AAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.G.CCCCCcgc                        >  2:2609139/1‑98 (MQ=14)                   AAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.G.CCCCCcgct                       >  2:3326605/1‑97 (MQ=14)                   AAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.G.CCCCCcgct                       <  1:591446/101‑5 (MQ=14)                    AACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.G.CCCCCcgctt                      <  1:4792806/101‑6 (MQ=14)                    AACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.G.CCCCCcgctt                      <  1:2172978/101‑6 (MQ=14)                    AACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.G.CCCCCcgctt                      <  1:4866541/101‑6 (MQ=14)                    AACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.G.CCCCCcgctt                      <  1:557009/101‑6 (MQ=14)                    AACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.G.CCCCCcgctt                      >  2:2855740/1‑96 (MQ=14)                     ACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTC                      <  1:2496375/101‑1 (MQ=14)                      CCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCG                     <  1:4139656/101‑1 (MQ=11)                      CCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCG                     <  2:3860618/101‑1 (MQ=11)                       CTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGC                    >  2:4759260/1‑101 (MQ=0)                       CTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGC                    <  2:1004211/101‑1 (MQ=0)                        TCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCT                   <  2:1377801/101‑1 (MQ=2)                        TCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCT                   >  1:1364667/1‑101 (MQ=2)                         CGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTTTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTC                  >  1:4179575/1‑101 (MQ=9)                         CGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGCGGGCTCT.GCCCCCCGCTTCGCTC                  <  2:866049/101‑1 (MQ=9)                          GCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGGTCTCG.CCCCCGCTTCGCTCC                 >  2:1596790/1‑101 (MQ=255)                           CCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCC                <  2:3316428/101‑1 (MQ=16)                           CCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCC                <  2:3752380/101‑1 (MQ=16)                             GCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCC              >  2:3572233/1‑101 (MQ=255)                             GCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCC              >  2:1731174/1‑101 (MQ=255)                              CGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCC             <  2:4547689/101‑1 (MQ=255)                              CGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCC             <  1:4620264/101‑1 (MQ=255)                              CGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCC             >  2:4222385/1‑101 (MQ=255)                               GCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCCG            <  2:4727743/101‑1 (MQ=255)                               GCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCCG            <  2:3328483/101‑1 (MQ=255)                                CGCGCGGAAGGGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCCGG           <  1:4395797/101‑1 (MQ=255)                                 GCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCCGGG          <  2:2452374/101‑1 (MQ=255)                                 GCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCCGGG          <  2:2907444/101‑1 (MQ=255)                                 GCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCCGGG          <  1:1596922/101‑1 (MQ=255)                                 GCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCCGGG          <  2:3324892/101‑1 (MQ=255)                                 GCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCCGGG          >  2:4260259/1‑101 (MQ=255)                                   GCGGAAGAGGCGGCGAANATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCCGGGAT        <  2:744706/101‑1 (MQ=255)                                   GCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCCGGGAT        <  1:103711/101‑1 (MQ=255)                                   GCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCCGGGAT        <  1:1309674/101‑1 (MQ=255)                                    CGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCCGGGATA       <  1:947948/101‑1 (MQ=255)                                    CGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCCGGGATA       <  1:4814048/101‑1 (MQ=255)                                    CGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCCGGGATA       >  2:4341734/1‑101 (MQ=255)                                     GGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCCGGGATAT      >  2:1098316/1‑101 (MQ=255)                                     GGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCCGGGATAT      <  2:3178316/101‑1 (MQ=255)                                     GGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTAT.GCCCCCCGCTTCGCTCCCCCCGGGATAT      <  1:2408143/101‑1 (MQ=255)                                      GAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCCGGGATATT     <  2:3292107/101‑1 (MQ=255)                                      GAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCCGGGATATT     >  2:5008301/1‑101 (MQ=255)                                      GAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCCGGGATATT     <  2:3697561/101‑1 (MQ=255)                                      GAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCCGGGATATT     >  1:3766130/1‑101 (MQ=255)                                       AAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCCGGGATATTT    >  1:3133878/1‑101 (MQ=255)                                        AGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCCGGGATATTTt   >  1:3966356/1‑100 (MQ=255)                                        AGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCCGGGATATTTt   <  1:2533053/101‑2 (MQ=255)                                        AGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCCGGGATATTTt   <  1:1922384/101‑2 (MQ=255)                                        AGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCCGGGATATTTt   <  1:4762759/101‑2 (MQ=255)                                        AGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCCGGGATATTTt   <  1:3159928/101‑2 (MQ=255)                                         GAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGGTCT.GCCCCCCGCTTCGCTCCCCCCGGGATATTTtc  >  1:1976715/1‑99 (MQ=255)                                         GAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCCGGGATATTTtc  <  1:4655053/101‑3 (MQ=255)                                         GAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTCT.GCCCCCCGCTTCGCTCCCCCCGGGATATTTtc  >  2:441816/1‑99 (MQ=255)                                                                                                                                                GATCGAGGAAGCCCGCGAAAACCTCGCCGCGCGCGCGGAAGAGGCGGCGAAGATCGGCGCGGCGCTGAAGCGTCTGGCCGAACTCGGATAAAGGAAGAAGGGGGGCTC..................................  >  NC_014034/530832‑530939 ....................................................................................................GGGGGCTCT.G.CCCCCGCTTCGCTCCCCCCGGGATATTTGG  >  NC_014034/3609079‑3609110 Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 38 ≤  ATCG