New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 531049284 (1.260)72 (0.320) 16/184 18.7 0.33 intergenic (+127/+14) valS/RCAP_rcc00497 valyl‑tRNA synthetase/UbiA prenyltransferase
?NC_014034 1608059 = 14 (0.060)intergenic (+329/‑18) RCAP_rcc01484/murD hypothetical protein/UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase
Rejected: Position hash score below cutoff.

GCTCCCCCCGGGATATTTTCGGCAAGATAAAGGCCCGGAAGCCTCCCTTTATCTTGCCGGAAATATCCCAAGGGGGTCGGGGGGTGTGAAACCCCCGC....................................................................................................  >  NC_014034/530952‑531049
..........................................................................................ACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCACGGCGGCGGCAT  >  NC_014034/1608059‑1608158
                                                                                                                                                                                                      
                                                          tcAAATATCCCACGGGGGTGCGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGC                                         <  2:3511092/99‑1 (MQ=33)
                                                          tcAAATATCCCACGGGGGTGCGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGC                                         <  2:2644774/99‑1 (MQ=33)
                                                          tcAAATATCCCACGGGGGTGCGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGC                                         >  2:1727494/3‑101 (MQ=33)
                                                           cAAATATCCCACGGGGGTGCGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCT                                        >  1:253084/2‑101 (MQ=32)
                                                            AAATATCCCACGGGGGTGCGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTG                                       >  1:68691/1‑101 (MQ=32)
                                                             AATATCCCACGGGGGTGCGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGG                                      >  1:251943/1‑101 (MQ=32)
                                                             AATATCCCACGGGGGTGCGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGG                                      <  1:1045496/101‑1 (MQ=32)
                                                              ATATCCCATGGGGGTGCGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGG                                     >  1:2700213/1‑101 (MQ=17)
                                                              ATATCCCACGGGGGTGCGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGG                                     >  2:219861/1‑101 (MQ=32)
                                                              ATATCCCACGGGGGTGCGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGG                                     >  1:3030673/1‑101 (MQ=32)
                                                               TATCCCACGGGGGTGCGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGG                                    >  1:2535833/1‑101 (MQ=32)
                                                                ATCCCACGGGGGTGCGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGC                                   >  2:4826333/1‑101 (MQ=32)
                                                                ATCCCACGGGGGTGCGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGC                                   >  1:160925/1‑101 (MQ=32)
                                                                 TCCCACGGGGGTGCGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCT                                  <  2:2706765/101‑1 (MQ=31)
                                                                 TCCCACGGGGGTGCGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCT                                  <  2:2900452/101‑1 (MQ=31)
                                                                  CCCACGGGGGTGCGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTC                                 >  1:3086014/1‑101 (MQ=11)
                                                                  CCCACGGGGGTGCGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTC                                 <  2:3980980/101‑1 (MQ=11)
                                                                  CCCACGGGGGTGCGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTC                                 >  2:4295209/1‑101 (MQ=11)
                                                                  CCCACGGGGGTGCGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTC                                 >  2:958432/1‑101 (MQ=11)
                                                                   CCACGGGGGTGCGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCG                                >  1:4215347/1‑101 (MQ=1)
                                                                     acGGGGGTGCGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGG                              >  1:2605398/3‑101 (MQ=1)
                                                                     acGGGGGTGCGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGG                              <  2:3291796/99‑1 (MQ=1)
                                                                     acGGGGGTGCGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGG                              >  2:3207199/3‑101 (MQ=1)
                                                                     acGGGGGTGCGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGG                              >  2:4841673/3‑101 (MQ=1)
                                                                      cGGGGGTGCGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGC                             <  2:2116239/100‑1 (MQ=1)
                                                                      cGGGGGTGCGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGC                             >  2:2087065/2‑101 (MQ=1)
                                                                      cGGGGGTGCGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGC                             <  2:1232029/100‑1 (MQ=1)
                                                                      cGGGGGTGCGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGC                             >  1:411878/2‑101 (MQ=1)
                                                                      cGGGGGTGCGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGC                             >  1:3273899/2‑101 (MQ=1)
                                                                       GGGGGTGCGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCG                            >  2:4899592/1‑101 (MQ=1)
                                                                       GGGGGTGCGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCG                            >  2:4438117/1‑101 (MQ=1)
                                                                       GGGGGTGCGGGGGGGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCG                            >  2:4157489/1‑101 (MQ=1)
                                                                        GGGGTGCGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGC                           <  2:2360368/101‑1 (MQ=1)
                                                                        GGGGTGCGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGC                           >  1:1492514/1‑101 (MQ=1)
                                                                        GGGGTGCGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGC                           >  1:4379267/1‑101 (MQ=1)
                                                                        GGGGTGCGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTACTGGGGCTCGGGCGC                           >  2:2159644/1‑101 (MQ=1)
                                                                         gggtgcGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCc                          >  2:4839448/7‑100 (MQ=1)
                                                                          ggtgcGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTC                         >  2:3897873/6‑101 (MQ=1)
                                                                           gtgcGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCG                        >  1:946472/5‑101 (MQ=1)
                                                                             gcGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGG                      >  2:1089811/3‑101 (MQ=1)
                                                                              cGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGT                     >  2:1199122/2‑101 (MQ=1)
                                                                              cGGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGT                     >  2:228640/2‑101 (MQ=1)
                                                                               GGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTC                    >  2:579039/1‑101 (MQ=1)
                                                                               GGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTC                    >  1:236446/1‑101 (MQ=1)
                                                                               GGGGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTC                    >  1:819010/1‑101 (MQ=1)
                                                                                GGGGTGTGAACCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCT                   <  1:2017464/101‑1 (MQ=1)
                                                                                 GGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTG                  >  2:4952171/1‑101 (MQ=1)
                                                                                 GGGTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTG                  >  2:3464337/1‑101 (MQ=1)
                                                                                  GGTGTGAACCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGG                 <  2:895569/101‑1 (MQ=1)
                                                                                   GTGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGC                >  1:367216/1‑101 (MQ=1)
                                                                                    gGTGAACCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCC               <  1:1809007/100‑1 (MQ=1)
                                                                                    TGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGGGCTCGGGTCTGGCC               >  1:1054509/1‑101 (MQ=1)
                                                                                    TGTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCC               <  2:367163/101‑1 (MQ=1)
                                                                                     GTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATTTGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCA              >  2:1904457/1‑101 (MQ=1)
                                                                                     GTGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCA              >  1:2998735/1‑101 (MQ=1)
                                                                                      gGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAC             <  2:1335094/100‑1 (MQ=1)
                                                                                      TGAACCCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAC             <  1:3201730/101‑1 (MQ=1)
                                                                                      TGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGGGCTCGGGTCTGGCCAC             >  2:2076785/1‑101 (MQ=1)
                                                                                      TGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAC             <  2:4665313/101‑1 (MQ=1)
                                                                                      TGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAC             >  1:4143501/1‑101 (MQ=1)
                                                                                      TGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAC             <  2:1501202/101‑1 (MQ=1)
                                                                                      TGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCAC             <  1:1579751/101‑1 (MQ=1)
                                                                                      TGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGGCTGGCCcc             >  2:4537826/1‑99 (MQ=1)
                                                                                      TGAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTAGCGGTGCTGGCGCTCGGGCGCTCGGGTCTGGCCAC             >  2:2850056/1‑101 (MQ=0)
                                                                                       GAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCACG            >  1:2856562/1‑101 (MQ=1)
                                                                                       GAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCACG            >  2:4450889/1‑101 (MQ=1)
                                                                                       GAAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCACG            <  2:2526301/101‑1 (MQ=1)
                                                                                        AAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCACGG           >  1:2219632/1‑101 (MQ=1)
                                                                                        AAACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCACGG           <  2:1646208/101‑1 (MQ=1)
                                                                                         AACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCACGGC          <  2:4609697/101‑1 (MQ=1)
                                                                                         AACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCACGGC          >  1:3578087/1‑101 (MQ=1)
                                                                                         AACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGGCTGGCCACGGC          >  1:3309815/1‑101 (MQ=1)
                                                                                                                                                                                                      
GCTCCCCCCGGGATATTTTCGGCAAGATAAAGGCCCGGAAGCCTCCCTTTATCTTGCCGGAAATATCCCAAGGGGGTCGGGGGGTGTGAAACCCCCGC....................................................................................................  >  NC_014034/530952‑531049
..........................................................................................ACCCCCGCAGCTTACGGAGGTCGCAGATGATACCGGTTCAGGGATATGAGGGTGCGCGCGTCGCGGTGCTGGGGCTCGGGCGCTCGGGTCTGGCCACGGCGGCGGCAT  >  NC_014034/1608059‑1608158

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 39 ≤  ATCG