New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 543912 =277 (1.150)2 (0.010) 2/196 29.4 0.01 coding (702/861 nt) RCAP_rcc00509 hypothetical protein
?NC_014034 1113205 = 272 (1.110)coding (2009/3525 nt) RCAP_rcc01035 hypothetical protein
Rejected: Position hash score below cutoff.

TAGACCGGCGAGGTGTCGACCGCATCCTGCAAGAGCCCCTTGCCGATCGTCACGTCGCCCTGTTTGATCGCCGACAGCGCCGCCGTGTAAAGCAGCTTCGCC....................................................................................................  <  NC_014034/544013‑543912
....................................................................................................CCTTGAGCCAGTTCCACACCCCTTCGATGAAATCGAGCGCCTGCTGGGCGAATTTGATCACCGCCTGAAAGACCTGGCCCGCGATCTTGAACAGCACATTCG  >  NC_014034/1113205‑1113304
                                                                                                                                                                                                          
                                                                    CGCCGACAGCGCCGCCGTGTAAAGCAGCTTCGCCTTGAGCCAGTTCCACACCCCTTCGATGAAATCGAGCGCCTGCTGGGCGAATTTGATCACCGCCTGAA                                   >  2:1154322/1‑101 (MQ=255)
                                                                     GCCGACAGCGCCGCCGTGTAAAGCAGCTTCGCCTTGAGCCAGTTCCACACCCCTTCGATGAAATCGAGCGCCTGCTGGGCGAATTTGATCACCGCCTGAAA                                  <  1:1154439/101‑1 (MQ=255)
                                                                                                                                                                                                          
TAGACCGGCGAGGTGTCGACCGCATCCTGCAAGAGCCCCTTGCCGATCGTCACGTCGCCCTGTTTGATCGCCGACAGCGCCGCCGTGTAAAGCAGCTTCGCC....................................................................................................  <  NC_014034/544013‑543912
....................................................................................................CCTTGAGCCAGTTCCACACCCCTTCGATGAAATCGAGCGCCTGCTGGGCGAATTTGATCACCGCCTGAAAGACCTGGCCCGCGATCTTGAACAGCACATTCG  >  NC_014034/1113205‑1113304

Base quality scores:  ATCG  < 3 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG