New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_014034 | = 565336 | 240 (1.030) | 68 (0.290) | 34/190 | 12.2 | 0.28 | intergenic (+151/+11) | RCAP_rcc00526/RCAP_rcc00527 | dimethylglycine dehydrogenase/family 25 glycosyl hydrolase |
? | NC_014034 | 1303939 = | 117 (0.480) | intergenic (+126/+31) | urtE/RCAP_rcc01231 | urea ABC transporter ATP‑binding protein UrtE/UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase | |||||
Rejected: Position hash score below cutoff. |
GTCGCAAGGGCGTATTTGGACCAAGAAAAAGCGGGCGTGTTTTTTCTTGGTGAAAATACGCCGGGGGGAGACTTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCC.................................................................................................... > NC_014034/565232‑565336
....................................................................................................CCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATAAAGCGCGCCGAG > NC_014034/1303939‑1304038
atatcCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCG > 2:454484/6‑101 (MQ=12)
atatcCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCG < 2:2858398/96‑1 (MQ=12)
atatcCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCG > 2:2784301/6‑101 (MQ=12)
tatcCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGC > 2:2173145/5‑101 (MQ=9)
atcCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCC > 2:3972019/4‑101 (MQ=2)
atcCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCC > 1:4200828/4‑101 (MQ=2)
atcCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCC < 1:2858246/98‑1 (MQ=2)
CCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGTGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGC > 1:4214836/1‑101 (MQ=0)
CCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGC > 2:912708/1‑101 (MQ=0)
GGGGGGTGAATTCGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCAT > 1:3609957/1‑101 (MQ=9)
GGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATC < 2:3131550/101‑1 (MQ=17)
GGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATC < 1:4248152/101‑1 (MQ=17)
GGGTGAATTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCATCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAG > 2:1233818/1‑101 (MQ=9)
ggtgaaTTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGG < 2:2282011/95‑1 (MQ=17)
ggtgaaTTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGG > 2:4154897/7‑101 (MQ=14)
gtgaaTTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGG > 2:2780686/6‑101 (MQ=14)
gtgaaTTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGG < 2:2600959/96‑1 (MQ=14)
tgaatgGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGT < 2:424171/95‑1 (MQ=0)
tgaaTTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGc > 1:1431343/5‑100 (MQ=11)
gaaTTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTC > 2:249919/4‑101 (MQ=1)
gaaTTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTC < 2:484184/98‑1 (MQ=1)
gaaTTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTC > 1:750429/4‑101 (MQ=1)
aaTTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCT > 2:3363881/3‑101 (MQ=11)
aaTTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCT > 2:4616971/3‑101 (MQ=11)
aaTTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCT < 2:535899/99‑1 (MQ=11)
aTTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTT > 2:1051481/2‑101 (MQ=14)
aTTGGCCGAAGGCCAAGAGGCGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTg > 2:651271/2‑100 (MQ=14)
TTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTG < 2:2359088/101‑1 (MQ=32)
TGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGC > 2:4705546/1‑101 (MQ=32)
TGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGC < 1:2100518/101‑1 (MQ=32)
GGCCGAAGGCCAGGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCG > 1:2731027/1‑101 (MQ=17)
GCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGC > 2:3984571/1‑101 (MQ=32)
GCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGC < 2:3495847/101‑1 (MQ=32)
GCCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGC > 2:2104227/1‑101 (MQ=32)
CCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCA > 2:1058582/1‑101 (MQ=32)
CCGAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCA > 2:2231167/1‑101 (MQ=32)
GAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACC < 2:2456729/101‑1 (MQ=31)
GAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACC > 2:3991403/1‑101 (MQ=31)
GAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACC > 2:4864767/1‑101 (MQ=31)
GAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACC > 1:2056675/1‑101 (MQ=31)
GAAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCAGCCCGCATCAGGGTCTTGCGCACC > 1:1983339/1‑101 (MQ=14)
AAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCG > 1:207347/1‑101 (MQ=11)
AAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCG > 1:3958920/1‑101 (MQ=11)
AAGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCG > 2:2771679/1‑101 (MQ=11)
AGGCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCGGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGG < 1:4002631/101‑1 (MQ=1)
GCCAGGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCT < 2:4013960/101‑1 (MQ=11)
GCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCT < 1:3012022/101‑1 (MQ=1)
GCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCT > 1:2842171/1‑101 (MQ=1)
GCCAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCT > 2:3070244/1‑101 (MQ=1)
CCAAGGGGGGGGGAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCCCCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTT < 1:4895154/101‑1 (MQ=0)
CAAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTG < 2:2645370/101‑1 (MQ=1)
AAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTta > 1:3833328/1‑99 (MQ=1)
AAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGA > 1:1736385/1‑101 (MQ=1)
AAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGA < 2:1890578/101‑1 (MQ=1)
AAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGA < 2:1850272/101‑1 (MQ=1)
AAGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGA > 1:2159177/1‑101 (MQ=1)
AGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAA > 2:1311440/1‑101 (MQ=1)
AGAGGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAA > 2:4089295/1‑101 (MQ=1)
AGGGGGGAAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACG < 2:4440697/101‑1 (MQ=1)
GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTTCACGC > 2:3744130/1‑101 (MQ=0)
GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTTAACGC > 2:1034421/1‑101 (MQ=1)
GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGC < 2:1875397/101‑1 (MQ=1)
GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGC < 1:3984873/101‑1 (MQ=1)
GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGC > 1:3721483/1‑101 (MQ=1)
GGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCA < 1:4467383/101‑1 (MQ=1)
GGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCA > 2:4276470/1‑101 (MQ=1)
GGCAGCGCCCCTTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATAA < 1:1051591/101‑1 (MQ=1)
GGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATAA < 1:2709661/101‑1 (MQ=1)
GCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATAAA < 2:2503434/101‑1 (MQ=1)
GCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATAAA < 1:3471294/101‑1 (MQ=1)
CAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATAAAa > 1:2671149/1‑100 (MQ=1)
cGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATAAAGC < 1:3564756/100‑1 (MQ=1)
AGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATAAAGC > 2:1122666/1‑101 (MQ=1)
CGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATAAAGCGC < 2:4446782/101‑1 (MQ=1)
CGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATAAAGCGC > 2:3669653/1‑101 (MQ=1)
GCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATAAAGCGCG > 2:3789819/1‑101 (MQ=1)
GTCGCAAGGGCGTATTTGGACCAAGAAAAAGCGGGCGTGTTTTTTCTTGGTGAAAATACGCCGGGGGGAGACTTGGCCGAAGGCCAAGAGGGGGGCAGCGCCCCC.................................................................................................... > NC_014034/565232‑565336
....................................................................................................CCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGCATCAGGGTCTTGCGCACCGGCTTGAACGCATAAAGCGCGCCGAG > NC_014034/1303939‑1304038
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 19 ≤
ATCG
< 27 ≤
ATCG
< 33 ≤
ATCG
< 39 ≤
ATCG
|