New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 576959191 (0.850)2 (0.010) 2/184 28.6 0.01 coding (75/135 nt) RCAP_rcc00535 hypothetical protein
?NC_014034 1629111 = 182 (0.740)coding (400/1215 nt) tetA tetracycline resistance protein, class A
Rejected: Position hash score below cutoff.

CTTTCCGGGGCTCGAGATGGGGACCGATCCGCGCTTTCTGGCGTGAGTCAGGCGAAGAAGGCGGTCCAGGCGGTGCCGCCCACGGCGACGGCCAGACTAGCCGCGCCC....................................................................................................  >  NC_014034/576852‑576959
....................................................................................................CCGCGCCCGAGGATCGCGCCCGCGCCTTTGGCTGGCTGGGCGCGGCTTTGGGGCTTGGCTTCGTGCTGGGGCCAGCCTTGGGCGGGTTGCTTGGCGCCTTTGGGCCGC  >  NC_014034/1629111‑1629210
                                                                                                                                                                                                                
                                                        GAAGGCGGTCCAGGCGGTGCCGCCCACGGCGACGGCCAGACTAGCCGCGCCCGAGGATCGCGCCCGCGCCTTTGGCTGGCTGGGCGCGGCTTTGGGGCTTG                                                     >  2:3059132/1‑101 (MQ=255)
                                                             CGGTCCAGGCGGTGCCGCCCACGGCGACGGCCAGACTAGCCGCGCCCGAGGATCGCGCCCGCGCCTTTGGCTGGCTGGGCGCGGCTTTGGGGCTTGGCTTC                                                <  1:3059370/101‑1 (MQ=255)
                                                                                                                                                                                                                
CTTTCCGGGGCTCGAGATGGGGACCGATCCGCGCTTTCTGGCGTGAGTCAGGCGAAGAAGGCGGTCCAGGCGGTGCCGCCCACGGCGACGGCCAGACTAGCCGCGCCC....................................................................................................  >  NC_014034/576852‑576959
....................................................................................................CCGCGCCCGAGGATCGCGCCCGCGCCTTTGGCTGGCTGGGCGCGGCTTTGGGGCTTGGCTTCGTGCTGGGGCCAGCCTTGGGCGGGTTGCTTGGCGCCTTTGGGCCGC  >  NC_014034/1629111‑1629210

Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG