New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 68721251 (1.130)2 (0.010) 2/182 28.4 0.01 coding (1031/1089 nt) flhB flagellar biosynthetic protein FlhB
?NC_014034 = 1230040 229 (0.930)coding (775/894 nt) ccoP cbb3‑type cytochrome c oxidase subunit III
Rejected: Position hash score below cutoff.

AGGCCGGGGTGCCGATCCATTCCGATCCGCCGACGGCCCGGGCGCTTTATGCGGCGGTCGACATCGGTCAGGAAATTCATCCGGACCATTATCGCCCCGTCGCCGCGGC....................................................................................................  >  NC_014034/68613‑68721
....................................................................................................CGCCGCGGCCCAGCTGTATCGTGGTGGTGATCGTATTCGCATCGCCGCCATAAAGCCAGATCCCGTCGGTGAGGTTGGGCGCGCCCATCTCCACCATGCCCTTGGCGTC  <  NC_014034/1230040‑1229941
                                                                                                                                                                                                                 
                                                                   gacctAAATTCATCCGGACCATTATCGCCCCGTCGCCGCGGCCCAGCTGTATCGTGGTGGTGATCGTCTTCGCATCGCCGCCATAAAGCCAGATCCCGTCG                                           <  1:2725701/96‑1 (MQ=255)
                                                                        AAATTCATCCGGACCATTATCGCCCCGTCGCCGCGGCCCAGCTGTATCGTGGTGGTGATCGTCTTCGCATCGCCGCCATAAAGCCAGATCCCGTCGagatc                                      >  2:2725500/1‑96 (MQ=255)
                                                                                                                                                                                                                 
AGGCCGGGGTGCCGATCCATTCCGATCCGCCGACGGCCCGGGCGCTTTATGCGGCGGTCGACATCGGTCAGGAAATTCATCCGGACCATTATCGCCCCGTCGCCGCGGC....................................................................................................  >  NC_014034/68613‑68721
....................................................................................................CGCCGCGGCCCAGCTGTATCGTGGTGGTGATCGTATTCGCATCGCCGCCATAAAGCCAGATCCCGTCGGTGAGGTTGGGCGCGCCCATCTCCACCATGCCCTTGGCGTC  <  NC_014034/1230040‑1229941

Base quality scores:  ATCG  < 3 ≤  ATCG  < 10 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 39 ≤  ATCG