New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 744809	39 (0.180)	31 (0.140)	14/180	19.4	0.41	intergenic (+194/+18)	idi2/bchO	isopentenyl‑diphosphate delta‑isomerase/magnesium‑chelatase BchO
	?	NC_014034	1732880 =	51 (0.210)					intergenic (‑304/‑99)	RCAP_rcc01601/tgt	FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase
Rejected: Position hash score below cutoff.

AATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGC...................................................................................................  >  NC_014034/744704‑744809 ................................................................................................CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCCAAAGGAGCGCCCG  >  NC_014034/1732880‑1732978                                                                                                                                                                                                                                                                                GGGGGGGCGGGGGGTGAAGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTT                                         <  2:696480/101‑1 (MQ=12)                                                                        GCGGGGGGTGAAGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCC                                   <  1:4199792/101‑1 (MQ=17)                                                                           GGGGGTGAAGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGC                                >  1:1100806/1‑101 (MQ=17)                                                                            ggggagaccCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCG                               <  2:4305920/92‑1 (MQ=0)                                                                            GGGGTGAAGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCG                               >  1:3700714/1‑101 (MQ=17)                                                                             gggtgaAGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGC                              >  2:2928106/7‑101 (MQ=17)                                                                             gggtgaAGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCCGCGC                              >  1:3128182/7‑101 (MQ=12)                                                                              gttgacGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCT                             <  2:779340/95‑1 (MQ=0)                                                                              ggtgcAGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCT                             <  1:3266490/96‑1 (MQ=14)                                                                                 gagtCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCT                          <  2:338234/97‑1 (MQ=1)                                                                                 gaAGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCT                          >  2:2502121/3‑101 (MQ=31)                                                                                 gaAGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCT                          >  2:2478147/3‑101 (MQ=31)                                                                                   ccCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAA                        <  2:3969236/99‑1 (MQ=1)                                                                                   ccCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAA                        <  2:2131660/99‑1 (MQ=1)                                                                                   AGCCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAA                        >  2:2349969/1‑101 (MQ=1)                                                                                     CCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAAC                      <  2:850330/101‑1 (MQ=1)                                                                                     CCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAAC                      <  2:2055739/101‑1 (MQ=1)                                                                                     CCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAAC                      <  1:1253929/101‑1 (MQ=1)                                                                                     CCCCCCGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCCTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCCTTCGGCCCGGCGCTGCTCAAC                      >  2:1859219/1‑101 (MQ=0)                                                                                          CGCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCG                 >  1:30969/1‑101 (MQ=1)                                                                                           GCGGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGC                >  1:3007731/1‑101 (MQ=1)                                                                                            CGGGTCGCCTCAGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCC               <  1:4864337/101‑1 (MQ=1)                                                                                             GGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCCA              >  1:3827121/1‑101 (MQ=1)                                                                                             GGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCCA              <  2:3186628/101‑1 (MQ=1)                                                                                             GGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCCA              <  1:3280553/101‑1 (MQ=1)                                                                                             GGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCCA              >  1:2281270/1‑101 (MQ=1)                                                                                             GGGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACCCGCGCCA              >  2:2274152/1‑101 (MQ=1)                                                                                              GGTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCCAA             <  1:4004572/101‑1 (MQ=1)                                                                                               GTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCCAAA            >  2:1468923/1‑101 (MQ=1)                                                                                               GTCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCCAAA            <  1:1825146/101‑1 (MQ=1)                                                                                                TCGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCCAAAG           >  2:2804728/1‑101 (MQ=1)                                                                                                                                                                                                               AATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGC...................................................................................................  >  NC_014034/744704‑744809 ................................................................................................CGCCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCCAAAGGAGCGCCCG  >  NC_014034/1732880‑1732978 Base quality scores:  ATCG  < 3 ≤  ATCG  < 16 ≤  ATCG  < 24 ≤  ATCG  < 32 ≤  ATCG  < 39 ≤  ATCG