New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 846836 =244 (1.070)2 (0.010) 2/186 28.7 0.01 coding (186/633 nt) hupD hydrogenase maturation protease HupD
?NC_014034 = 934436 199 (0.810)coding (533/975 nt) RCAP_rcc00843 hypothetical protein
Rejected: Position hash score below cutoff.

GGCTCATCTTTTTCGCGCCCATGAAGGCGGGCACGTCGTCGTCACGCATCGTGACCAGCGTGCCGGGGGTGAAGCCGAAATCGACCGCGTCAAAGACGATCAGCGCC....................................................................................................  <  NC_014034/846942‑846836
....................................................................................................CAGCGCCAGCGTCTGCATCCAGAGCGGCTGCCCCGCGGGCAGCGAGGCCATGGCGATGGTCATGATCTCGGCCGAAAGGATGAAATCGGTCTTCACCGCGCCCGAGA  <  NC_014034/934436‑934337
                                                                                                                                                                                                               
                                                                  GGGTGAAGCCGAAATCGACCGCGTCAAAGACGATCAGCGCCAGCGTCTGCATCCAGAGCGGCTGCCCCGCGGGCAGCGAGGCCATGGCGATGGTCATGATC                                          >  2:3380543/1‑101 (MQ=255)
                                                                         GCCGAAATCGACCGCGTCAAAGACGATCAGCGCCAGCGTCTGCATCCAGAGCGGCTGCCCCGCGGGCAGCGAGGCCATGGCGATGGTCATGATCTCGGCCG                                   <  1:3380806/101‑1 (MQ=255)
                                                                                                                                                                                                               
GGCTCATCTTTTTCGCGCCCATGAAGGCGGGCACGTCGTCGTCACGCATCGTGACCAGCGTGCCGGGGGTGAAGCCGAAATCGACCGCGTCAAAGACGATCAGCGCC....................................................................................................  <  NC_014034/846942‑846836
....................................................................................................CAGCGCCAGCGTCTGCATCCAGAGCGGCTGCCCCGCGGGCAGCGAGGCCATGGCGATGGTCATGATCTCGGCCGAAAGGATGAAATCGGTCTTCACCGCGCCCGAGA  <  NC_014034/934436‑934337

Base quality scores:  ATCG  < 3 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG