New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 953318 =225 (0.980)2 (0.010) 2/188 28.9 0.01 coding (770/1488 nt) RCAP_rcc00862 divalent anion:Na+ symporter
?NC_014034 = 1357855 225 (0.920)coding (273/1602 nt) RCAP_rcc01276 Cas1 family CRISPR‑associated protein
Rejected: Position hash score below cutoff.

AGATCGGCTTCTTTCAATGGATGCTGTTTGGCGTGCCGGTGGTGGCAGTGATGCTGCCGGTCATGCTGGTGCTGCTGACCCGCTGGCTGTTCGACCTTGGCGGGCT...................................................................................................  <  NC_014034/953423‑953318
....................................................................................................CGGGCTCGACGACCGTTTCGACAGCGGCGCCGCCCGGATCGTGCGCTTTGCCGATGATTTCGTCATCCTCGCCCGCAGCGAGGCCGGGGCCGAGGAAGCCCGCGC  <  NC_014034/1357855‑1357757
                                                                                                                                                                                                             
                                         GTGGCAGTGATGCTGCCGGTCATGCTGGTGCTGCTGACCCGCTGGCTGTTCGACCTTGGCGGGCTCGACGACCGTTTCGACAGCGGCGCCGCCCGGATCGT                                                                 >  1:4075998/1‑101 (MQ=255)
                                                                             gCCCGCTGGCTGTTCGACCTTGGCGGGCTCGACGACCGTTTCGACAGCGGCGCCGCCCGGATCGTGCGCTTTGCCGATGATTTCGTCATCCTCGCCCGCAG                             <  2:4075695/100‑1 (MQ=255)
                                                                                                                                                                                                             
AGATCGGCTTCTTTCAATGGATGCTGTTTGGCGTGCCGGTGGTGGCAGTGATGCTGCCGGTCATGCTGGTGCTGCTGACCCGCTGGCTGTTCGACCTTGGCGGGCT...................................................................................................  <  NC_014034/953423‑953318
....................................................................................................CGGGCTCGACGACCGTTTCGACAGCGGCGCCGCCCGGATCGTGCGCTTTGCCGATGATTTCGTCATCCTCGCCCGCAGCGAGGCCGGGGCCGAGGAAGCCCGCGC  <  NC_014034/1357855‑1357757

Base quality scores:  ATCG  < 3 ≤  ATCG  < 24 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG