New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	744784 =	28 (0.120)	38 (0.160)	2/192	29.2	0.55	intergenic (+169/+43)	idi2/bchO	isopentenyl‑diphosphate delta‑isomerase/magnesium‑chelatase BchO
	?	NC_014034	= 1253892	34 (0.140)					intergenic (+50/+41)	RCAP_rcc01181/hisH	hypothetical protein/imidazole glycerol phosphate synthase subunit HisH
Rejected: Position hash score below cutoff.

ATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGG  >  NC_014034/744684‑744884                                                                                                     |                                                                                                     atTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCg                                                                                                      >  1:4569468/1‑101 (MQ=255)  tttGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTTCAGCCTGTCCCACCCCTGCTTTTCCTTGGCGAAATACGCCGGGGGGTGCGGGGGGCgg                                                                                                     <  2:4782454/101‑1 (MQ=255)  tttGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCgg                                                                                                     <  2:2179291/101‑1 (MQ=255)  tttGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCgg                                                                                                     <  2:2119375/101‑1 (MQ=255)    tGGGGCAAGATGAAATGAACGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCAGGGGGCGGAg                                                                                                   <  2:1552753/101‑1 (MQ=255)     ggggCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTTGCAAAATACGCCGGGGGGGGCGGGGGGCAGatc                                                                                                  >  1:366550/1‑99 (MQ=255)     ggggCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGc                                                                                                  <  1:1824142/101‑1 (MQ=255)     ggggCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGc                                                                                                  <  1:2024239/101‑1 (MQ=255)     ggggCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGc                                                                                                  <  2:4699319/101‑1 (MQ=255)       ggCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGccc                                                                                                <  1:4770524/101‑1 (MQ=255)         cAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGccccc                                                                                              <  1:4547622/101‑1 (MQ=255)                     aatgaCTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGGCGccc                                                                                  >  1:1181757/1‑100 (MQ=255)                           tttCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGGCGCCTCGGGcc                                                                            >  2:540863/1‑101 (MQ=255)                                 tCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGGCGCCTCGGGCCCGcccc                                                                      >  2:3005217/1‑100 (MQ=255)                                 tCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGGCGCCCCGGGCCTGcccc                                                                      >  1:4786631/1‑100 (MQ=255)                                        cggTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGGCGCCCCGGGCCTGCCCCCGGCgga                                                               >  1:3536043/1‑99 (MQ=18)                                              aGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGGCGCCCCGGGCCTGCCCGAGGCGAAATCTCa                                                         >  1:1976687/1‑101 (MQ=255)                                                 cTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGCCGCCCCGGGGCTGCCCGCGGGGGAAACCCAccc                                                      >  1:4334138/1‑101 (MQ=14)                                                           ccTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCAACCCTCGAGCCAg                                            >  2:3240133/1‑101 (MQ=255)                                                                      ttGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGGCGCCCCGGGCCTGCCCGAGGCGAAATCTCACCCCTCCAGCCCGTCCCGAatcat                                 >  2:115537/1‑101 (MQ=21)                                                                             aaTACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGGCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGaa                          >  1:3563856/1‑101 (MQ=255)                                                                                    cGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGGGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCac                   >  2:4712632/1‑100 (MQ=255)                                                                                    cGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCAt                   >  1:4945669/1‑101 (MQ=255)                                                                                      gggggTGCGGGGGGCGGAGCCCCCCGCGGGCCGCCTCGGGGCCGCCCGTGGCGGAATTCCCCCCCTCGAGCCAGGCCAGAATCACTCCTGACAGCCCAtgc                 >  2:321701/1‑99 (MQ=16)                                                                                       ggggTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCCGTCCAGAATCATCCCTGAAAGCCCATCcg                >  2:1520827/1‑101 (MQ=255)                                                                                        gggTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCcgc               >  1:2812681/1‑101 (MQ=255)                                                                                          gTGCGGGGGGCGGAGCCCCCCGCGGGGCGCCTCCGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCgg             >  2:2862975/1‑101 (MQ=255)                                                                                             cGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCACTCCGCGGAaa          >  2:1526298/1‑101 (MQ=255)                                                                                              ggggggCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAAc         >  2:2998049/1‑101 (MQ=255)                                                                                               gggggCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAAcc        >  1:3942920/1‑101 (MQ=255)                                                                                               gggggCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAAcc        >  2:4098732/1‑101 (MQ=255)                                                                                                ggggCGGAGCCCCCCGCGGGTCGCCCCCGGCCTGCCCGAGGCGAAATCTCACCCCCCGAGCCCGTCCAGAATCAACCCTGAAAGCCCCTCCGCGGCCAccc       >  2:2440555/1‑100 (MQ=25)                                                                                                 gggCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTc      >  1:617768/1‑101 (MQ=255)                                                                                                    cGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTg   >  2:3974515/1‑101 (MQ=255)                                                                                                     ggAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTgg  >  2:2867246/1‑101 (MQ=255)                                                                                                     |                                                                                                     ATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGG  >  NC_014034/744684‑744884 Base quality scores:  ATCG  < 3 ≤  ATCG  < 10 ≤  ATCG  < 20 ≤  ATCG  < 31 ≤  ATCG  < 40 ≤  ATCG