BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1397567 =	153 (0.980)	93 (0.590)	41/128	5.3	0.42	coding (1449/1578 nt)	RCAP_rcc01307	hypothetical protein
*	?	NC_014034	= 1397797	108 (0.440)	93 (0.590)	41/128	5.3	0.42	intergenic (+101/+1797)	RCAP_rcc01307/RCAP_rcc01309	hypothetical protein/IS66 family transposase
Rejected: Position hash score below cutoff.

Only 100 of 322 total aligned reads displayed.


GTCATCACCACGCAACCGCCCTGCACCACCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACCCGATCATGG.C.C..CGCCTCAGCGCCGCGCT.GA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCCGCGGATCGGCGTGACCCGCCCCG...CCCATCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTAC  >  NC_014034/1397469‑1397667


gTCATCACCACGCAACCGCCCTGCACCACCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACCCGATCATGG.C.C..CGCCTCAGCGCCGCGCT.GA.CGTc                                                                                                       <  2:1067109/101‑1 (MQ=255)


 tcatcaCCACGCAACCGCCCTGCACCACCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACCCGATCATGG.C.C..CGCCTCAGCGCCGCGCT.GA.CGTcc                                                                                                      >  1:137353/1‑100 (MQ=255)


   atcaCCACGCAACCGCCCTGCACCACCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACCCGATCATGG.C.C..CGCCTCAGCGCCGCGCT.GA.CGTCGCt                                                                                                    <  2:394977/101‑1 (MQ=255)


      accacGCAACCGCCCTGCACCACCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACCCGATCATGG.C.C..CGCCTCAGCGCCGCGCT.GA.CGTCGCTccc                                                                                                 >  1:1000175/1‑101 (MQ=255)


      accacGCAACCGCCCTGCACCACCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACCCGATCATGG.C.C..CGCCTCAGCGCCGCGCT.GA.CGTCGCTccc                                                                                                 >  2:3220898/1‑101 (MQ=255)


      accacGCAACCGCCCTGCACCACCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACCCGATCATGG.C.C..CGCCTCAGCGCCGCGCT.GA.CGTCGCTccc                                                                                                 >  2:4454991/1‑101 (MQ=255)


       ccacGCACCCGCCCTGCCCCACCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACCCGATCATGG.C.C..CGCCTCAGCGCCGCGCT.CA.CGTCGCTcccc                                                                                                <  1:2733781/101‑1 (MQ=255)


       ccacGCAACCGCCCTGCACCACCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACCCGATCATGG.C.C..CGCCTCAGCGCCGCGCT.GA.CGTCGCTcccc                                                                                                >  1:877460/1‑101 (MQ=255)


         acGCAACCGCCCTGCACCACCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACCCGATCATGG.C.C..CGCCTCAGCGCCGCGCT.GA.CGTCGCTcccccc                                                                                              <  1:2079551/101‑1 (MQ=255)


           gCACCCGCCCTGCACCACCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACCCGATCATGG.C.C..CGCCTCAGCGCCGCGCT.GA.CGTCGCTCCCCCcgc                                                                                            <  2:786732/101‑1 (MQ=255)


           gCAACCGCCCTGCACCACCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACCCGATCATGG.C.C..CGCCTCAGCGCCGCGCT.GA.CGTCGCTCCCCCcgc                                                                                            >  1:498381/1‑101 (MQ=255)


           ccAACCGCCCTGCACCACCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACCCGATCATGG.C.C..CGCCTCAGCGCCGCGCT.GA.CGTCGCTCCCCCcgc                                                                                            <  2:109327/100‑1 (MQ=255)


               ccGCCCTGCACCACCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACCCGATCATGG.C.C..CGCCTCAGCGCCGCGCT.GA.CGTCGCTCCCCCCGCgggg                                                                                        >  2:4000569/1‑101 (MQ=255)


                 gCCCTGCACCACCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACCCGATCATGG.C.C..CGCCTCAGCGCCGCGCT.GA.CGTCGCTCCCCCCGCGGGGGc                                                                                      >  2:625108/1‑101 (MQ=255)


                   ccTGCCCCACCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACCCGATCATGG.C.C..CGCCTCAGCGCCGCGCT.GA.CGTCGCTCCCCCCGCGGGGGCGt                                                                                    <  2:3310703/101‑1 (MQ=255)


                   ccTGCACCACCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACCCGATCATGG.C.C..CGCCTCAGCGCCGCGCT.GA.CGTCGCTCCCCCCGCGGGGGCGt                                                                                    >  1:1449391/1‑101 (MQ=255)


                   ccTGCACCACCGGTCGCTCCCCCCGCGGGGGCGGCGATCGAAACAACCCGATCATGG.C.C..CGCCTCAGCGCCGCGCT.GA.CGTCGCTCCCCCCGCGGGGGCGt                                                                                    <  1:4336114/101‑1 (MQ=255)


                     ggaacaggatgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGCTCGA.C.C..CAGTTCA.CGGCGGGCT.CT.CGTCGCCCCCCCCCCGGGGGCGTGGa                                                                                 >  1:635273/11‑101 (MQ=0)


                      tgccgctgcgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGT.CGG..CGGC.GAACACCGATAC.CG.CGTCGCTCCCCCCGCGGGGGCGTGGa                                                                                 <  1:4013275/92‑1 (MQ=2)


                       aacaggatgTCGCACCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGC.TCG.A.C..CGAGTTCACGGCGGGCT.AT.CGGCGCTCCCCCCGCGGGGGCGTGGATc                                                                               <  1:3367032/93‑1 (MQ=0)


                         gcgctggTCGCTCCACCCGCGGGGGCGTGGATCGAAACTTGATGACCA.GA.T.C..CGCAATCG.GCCGGGCTCGATCGTCGCTCCCCCCGCGGGGGCGTGGATCg                                                                              <  1:4358757/96‑1 (MQ=0)


                         cgctgcgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGT.CGG..CGGC.GAACACCGATAC.CG.CGTCGCTCCCCCCGCGGGGGCGTGGATCg                                                                              >  1:3940410/7‑101 (MQ=2)


                         ccaccGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACCCGATCATGG.C.C..CGCCTCAGCGCCGCGCT.GA.CGTCGCTCCCCCCGCGGGGGCGTGGATCg                                                                              <  1:1244156/101‑1 (MQ=255)


                         ccaccGGTCCCCCCCCCCGCGGGGGCGTGGATCGAACCAACCCGATCATGG.C.C..CGCCTCAGCGCCGCGCT.GA.CGTCGCTCCCCCCGCGGGGGCGTGGATCg                                                                              <  2:1556717/101‑1 (MQ=255)


                          gctgcgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGT.CGG..CGGC.GAACACCGCTAC.CG.CGTCGCTCCCCCCGCGGGGGCGGGGATCGa                                                                             >  2:2011300/6‑101 (MQ=2)


                          cgagcgTCTCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAG.C.CAAGGCCGCAGCAGCG.GCT.GC.GGTCGCTCCCCCCGCGGGGGCGTGGATCg                                                                              <  1:4184528/96‑1 (MQ=0)


                          caccGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACCCGATCATGG.C.C..CGCCTCAGCGCCGCGCT.GA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGa                                                                             <  2:4728789/101‑1 (MQ=255)


                           gagcgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAG.C.CAAGGCCGCAGCAGCG.GCT.GC.GGTCGCTCCCCCCGCGGGGGCGTGGATCGa                                                                             >  1:4539078/5‑101 (MQ=2)


                            tgcgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGT.CGG..CGGC.GAACACCGATAC.CG.CGTCGCTCCCCCCGCGGGGGCGTGGATCGaaa                                                                           <  1:3873980/98‑1 (MQ=2)


                            ccGGTCCCTCCCCCCGCGGGGGCGTGGATCGAAACAACCCGATCATGG.C.C..CGCCTCAGCGCCGCGCT.GA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGaaa                                                                           <  2:4332163/101‑1 (MQ=255)


                             cGGTCGCTCCCCCGGGGGGGGCGTGGATCGAAACAA.CTGACCCGGGAA.C..GGCCTGTGCGCTG.GAC.GT.GTTCGCTCCCCCCGCGGGGGCGTGGATCGAAAct                                                                         <  2:1815864/101‑2 (MQ=2)


                              cgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAG.C.CAAGGCCGCAGCAGCG.GCT.GC.GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAc                                                                          >  1:3283097/2‑101 (MQ=2)


                               gTCGCTCCCCCCGGGGGGGCGTGGATCGAAACACCCCGAACCTGT.CGG..CGGC.GAACACCGATAC.CG.CGTCGCTCCCCCCGCGGGGGCGGGGATCGAAACAt                                                                        >  1:2483848/1‑101 (MQ=2)


                               gTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGC.TCG.A.C..CGAGTTCACGGCGGGCT.AT.CGTCGCTCCCCCCCCGGGGGCGGGGGTCGAAAcggg                                                                       >  1:1830242/1‑98 (MQ=0)


                                tCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGT.CGG..CGGC.GAACACCGATAC.CG.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATc                                                                       >  1:1524598/1‑101 (MQ=2)


                                tCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGT.CGG..CGGC.GAACACCGATAC.CG.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATc                                                                       <  1:3137738/101‑1 (MQ=2)


                                tCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAG.C.CAAGGCCGCAGCAGCG.GCT.GC.GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACaa                                                                        >  1:2344235/1‑100 (MQ=2)


                                tCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACCCGATCATGG.C.C..CGCCTCAGCGCCGCGCT.GA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATc                                                                       >  1:1712485/1‑101 (MQ=255)


                                gcGCTCCCCCCGCTGGGGCGTGGATCGAAACAACCCGATCATGG.C.C..CGCCTCAGCGCCGCGCT.GA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATc                                                                       <  2:2507836/100‑1 (MQ=255)


                                 cGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGC.TCG.A.C..CGAGTTCACGGCGGGCT.AT.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAcgggtc                                                                     <  2:2562468/101‑6 (MQ=2)


                                 cGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGC.TCG.A.C..CGAGTTCACGGCGGGCT.AT.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAcgggtc                                                                     <  1:2544229/101‑6 (MQ=2)


                                 cGCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGC.TCG.A.C..CGAGTTCACGGCGGGCT.AT.CGTCGCTCCCCCCCCGGGGGCGTGGATCGAAAcggggg                                                                     >  2:2184247/1‑96 (MQ=2)


                                 cGCTCCCCCCGCGGGGGCGTGGATCGAAACAACCCGATCATGG.C.C..CGCCTCAGCGCCGCGCT.GA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATcc                                                                      <  2:3122271/101‑1 (MQ=255)


                                 cGCTCCCCCCGCGGGGGCGTGGATCGAAACAACCCGATCATGG.C.C..CGCCTCAGCGCCGCGCT.GA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATcc                                                                      >  1:3557851/1‑101 (MQ=255)


                                  gCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGC.TCG.A.C..CGAGTTCACGGCGGGCT.AT.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAcgggtcg                                                                    <  1:4200446/101‑7 (MQ=2)


                                  gCTCCCCCCGCGGGGGCGTGGATCGAAACTATGCTGGC.TCG.A.C..CGAGTTCACGGCGGGCT.AT.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAcgggtcg                                                                    <  2:1481213/101‑7 (MQ=2)


                                  gCTCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAG.C.CAAGGCCGCAGCAGCG.GCT.GC.GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACaaaa                                                                      >  1:4126686/1‑98 (MQ=2)


                                   cTCCCCCCGCGGGGGCGTGGATCGAAACAACCCGATCATGG.C.C..CGCCTCAGCGCCGCGCT.GA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCcgc                                                                    >  2:2672079/1‑101 (MQ=255)


                                    tCCCCCCGCGGGGGCGTGGATCGAAACACCAATGCCGAAG.C.CAAGGCCGCAGCAGCG.GCT.GC.GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACaaaaag                                                                    >  2:3078866/1‑96 (MQ=0)


                                    cccccccGCGGGGGCGTGGATCGAAACTATGCTGGC.TCG.A.C..CGAGTTCACGGCGGGCT.AT.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAcgggtcgaa                                                                  <  1:2141492/100‑9 (MQ=2)


                                     ccccccGCGGGGGCGTGGATCGAAACTATGCTGGC.TCG.A.C..CGAGTTCACGGCGGGCT.AT.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAcgggtcgaag                                                                 <  2:4315229/101‑10 (MQ=2)


                                     ccccccGCGGGGGCGTGGATCGAAACACCAATGCCGAAG.C.CAAGGCCGCAGCAGCG.GCT.GC.GGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACaaaaagc                                                                   >  2:828414/1‑95 (MQ=0)


                                     ccccccGCGGGGGCGTGGATCGAAACAACCCGATCATGG.C.C..CGCCTCAGCGCCGCGCT.GA.CGTCGCTCCCCCCGCGGGGGCGGGGATCGAAACATCCGCgg                                                                  >  2:4934411/1‑101 (MQ=255)


                                       ccccGCGGGGGCGTGGATCGAAACAACCCGATCATGG.C.C..CGCCTCAGCGCCGCGCT.GA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAAATCCGCGGAt                                                                >  2:222497/1‑101 (MQ=255)


                                        cccGCGGGGGCGTGGGTCGAAACAACCCGATCATGG.C.C..CGCCCCAGCGCCGCGCT.GA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCCGCGGATc                                                               >  1:380968/1‑101 (MQ=255)


                                         ccGCGGGGGCGTGGATCGAAACAACCCGATCATGG.C.C..CGCCTCAGCGCCGCGCT.GA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCCGCGGATCg                                                              >  1:4919977/1‑101 (MQ=255)


                                             gggggCGTGGATCGAAACAACCCGATCATGG.C.C..CGCCTCAGCGCCGCGCT.GA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCCGCGGATCGGCGt                                                          <  1:1091230/101‑1 (MQ=255)


                                               gggCGTGGATCGAAACAACCCGATCATGG.C.C..CGCCTCAGCGCCGCGCT.GA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCCGCGGATCGGCGTGa                                                        >  1:1054237/1‑101 (MQ=255)


                                               gggCGTGGATCGAAACAACCCGATCATGG.C.C..CGCCTCAGCGCCGCGCT.GA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCCGCGGATCGGCGTGa                                                        >  1:1992731/1‑101 (MQ=255)


                                                    tGGATCGAAACAACCCGATCATGG.C.C..CGCCTCAGCGCCGCGCT.GA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCCGCGGATCGGCGTGAcccgc                                                   <  1:722210/101‑1 (MQ=255)


                                                     ggATCGAAACAACCCGATCATGG.C.C..CGCCTCAGCGCCGCGCT.GA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCCGCGGATCGGCGTGAcccgcc                                                  <  1:688426/101‑1 (MQ=255)


                                                     ggATCGAAACAACCCGATCATGG.C.C..CGCCTCAGCGCCGCGCT.GA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCCGCGGATCGGCGGGAgccgcc                                                  >  2:164977/1‑101 (MQ=255)


                                                      gATCGAAACAACCCGATCATGG.C.C..CGCCTCAGCGCCGCGCT.GA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCCGCGGATCGGCGTGAcccgccc                                                 >  1:4855283/1‑101 (MQ=255)


                                                       aTCGAAACAACCCGATCATGG.C.C..CGCCTCAGCGCCGCGCT.GA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCCGCGGATCGGCGTGAcccgcccc                                                >  1:2632627/1‑101 (MQ=255)


                                                        tCGAAACAACCCGATCATGG.C.C..CGCCTCAGCGCCGCGCT.GA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCCGCGGATCGGCGTGAcccgccccg                                               <  2:3610050/101‑1 (MQ=255)


                                                          gAAACAACCCGATCATGG.C.C..CGCCTCAGCGCCGCGCT.GA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCCGCGGATCGGCGTGACccgccccg...cc                                          <  1:1614023/101‑1 (MQ=255)


                                                          gAAACAACCCGATCATGG.C.C..CGCCTCAGCGCCGCGCT.GA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCCGCGGATCGGCGTGACccgccccg...cc                                          >  2:3189930/1‑101 (MQ=255)


                                                           aaaCAACCCGATCATGG.C.C..CGCCTCAGCGCCGCGCT.GA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCCGCGGATCGGCGTGACCcgccccg...ccc                                         >  2:2347835/1‑101 (MQ=255)


                                                           aaaCAACCCGATCATGG.C.C..CGCCTCAGCGCCGCGCT.GA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCCGCGGATCGGCGTGACCcgccccg...ccc                                         >  2:559564/1‑101 (MQ=255)


                                                             acaccCCGATCATGG.C.C..CGCCTCAGCGCCGCGCT.GA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCCGCGGATCGGCGTGACCCGCCCCG...CCCAt                                       <  2:4354256/101‑1 (MQ=255)


                                                             acaacCCGATCATGG.C.C..CGCCTCAGCGCCGCGCT.GA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCCGCGGATCGGCGTGACCCGCCCCG...CCCAt                                       >  2:339404/1‑101 (MQ=255)


                                                              caacCCGATCATGG.C.C..CGCCTCAGCGCCGCGCT.GA.TGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCCGCGGATCGGCGTGACCCGCCCCG...CCCATc                                      <  2:2937511/101‑1 (MQ=255)


                                                                  ccGATCATGG.C.C..CGCCTCAGCGCCGCGCT.GA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCCGCGGATCGGCGTGACCCGCCCCG...CCCATCGGTc                                  <  2:2384011/101‑1 (MQ=255)


                                                                   cGATCATGG.C.C..CGCCTCAGCGCCGCGCT.GA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCCGCGGATCGGCGTGACCCGCCCCG...CCCATCGGTCg                                 >  1:2406852/1‑101 (MQ=255)


                                                                    gATCATGG.C.C..CGCCTCAGCGCCGCGCT.GA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCCGCGGATCGGCGTGACCCGCCCCG...CCCCTCGGGCGc                                >  2:4573690/1‑101 (MQ=255)


                                                                      tCATGG.C.C..CGCCTCAGCGCCGCGCT.GA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCCGCGGATCGGCGTGACCCGCCCCG...CCCATCGGTCGCTc                              <  1:3190181/101‑1 (MQ=255)


                                                                       caggg.C.C..CGCCTCAACGCCGCGCT.GA.GGCCGCTTCCCCCGCGGGGGCGGGGATCCAAACATCCGCGGATCGGCGGGCGCCGCCCCG...CCCGTCCGGCGCttc                             >  2:4142152/4‑99 (MQ=255)


                                                                        aggg.C.C..CGCCTCAGCGCCGCGCT.GA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCCGCGTATCGGCGTGACCCGCCCCG...CCCATCGGTCGCTccc                            <  1:2214594/99‑1 (MQ=255)


                                                                        aTGG.C.C..CGCCTCAGCGCCGCGCT.GA.CGTCGCTCCCCCCGCGGGGGCGTGGCTCGAAACGTCCTCGGATCGGCCTGAGCCGCCCCA...CCCCTCgggctcggcc                            >  1:348363/1‑93 (MQ=25)


                                                                               c..cGCCTCAGCGCCGCGCT.GA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCCGCGGATCGGCGTGACCCGCCCCG...CCCATCGGTCGCTCCCCCcgc                       <  1:3714466/101‑1 (MQ=255)


                                                                               c..cGCCTCAGCGCCGCGCT.GA.CGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACATCCGCGGATCGGCGTGACCCGCCCCG...CCCATCGGTCGCTCCCCCcgc                       <  2:1272460/101‑1 (MQ=255)


                                                                                  cGCCTCAGCGCCGCGCT.GA.CGCCGCCCCCCCCGCGGGGGCGTGGATCGAAACATCCGCGGATCGGCGTGACCCGCCCCG...CCCATCGGTCGCTCCCCCcgcg                      <  1:1905032/101‑1 (MQ=255)


                                                                                        aGCGCCGCGCT.GA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCCGCGGATCGGCGTGACCCGCCCCG...CCCATCGGTCGCTCCCCCCGCGGGGGCg                >  2:3096725/1‑101 (MQ=255)


                                                                                        aGCGCCGCGCT.GA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCCGCGGATCGGCGTGACCCGCCCCG...CCCATCGGTCGCTCCCCCCGCGGGGGCg                >  2:3719414/1‑101 (MQ=255)


                                                                                           gccgcGCT.GA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCCGCGGATCGGCGTGACCCGCCCCG...CCCATCGGTCGCTCCCCCCGCGGGGGCGTgg             <  1:3102141/101‑1 (MQ=255)


                                                                                           gccgcGCT.GA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCCGCGGATCGGCGTGACCCGCCCCG...CCCATCGGTCGCTCCCCCCGCGGGGGCGTgg             >  1:282671/1‑101 (MQ=255)


                                                                                            ccgcGCT.GC.CGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACATCCGCGGATCGGCGTGACCCGCCCCG...CCCATCGGTCGCTCCCCCCGCGGGGGCGTGGa            <  1:4257497/101‑1 (MQ=255)


                                                                                            ccgcGCT.GA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCCGCGGATCGGCGTGACCCGCCCCG...CCCATCGGTCGCTCCCCCCGCGGGGGCGTGGa            <  1:4424354/101‑1 (MQ=255)


                                                                                              gcgcT.GA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCCGCGGATCGGCGTGACCCGCCCCG...CCCATCGGTCGCTCCCCCCGCGGGGGCGTGGATc          <  1:3056722/101‑1 (MQ=255)


                                                                                               cgcT.GA.CGTCGCTCCCCCGGCGGGGGCGTGGATCGAAACATCCGCGGATCGGCGTGACCCGCCCCG...CCCATCGGTCGCTCCCCCCGCGGGGGCGTGGATCg         <  2:1775403/101‑1 (MQ=255)


                                                                                                gcT.GA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCCGCGGATCGGCGTGCCCCGCCCCG...CCCATCGGTCGCTCCCCCCGCGGGGGCGTGGATCGa        <  2:384927/101‑1 (MQ=255)


                                                                                                gcT.GA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCCGCGGATCGGCGTGACCCGCCCCG...CCCATCGGTCGCTCCCCCCGCGGGGGCGTGGATCGa        >  2:3554424/1‑101 (MQ=255)


                                                                                                gcT.GA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCCGCGGATCGGCGTGACCCGCCCCG...CCCATCGGTCGCTCCCCCCGCGGGGGCGGGGATCGa        >  1:4737577/1‑101 (MQ=255)


                                                                                                 cT.GA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCCGCGGATCGGCGTGACCCGCCCCG...CCCATCGGTCGCTCCCCCCGCGGGGGCGTGGATCGaa       >  1:2381618/1‑101 (MQ=255)


                                                                                                  t.GA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCCGCGGATCGGCGTGACCCGCCCCG...CCCATCGGTCGCTCCCCCCGCGGGGGCGTGGATCGaaa      <  1:54324/101‑1 (MQ=255)


                                                                                                    gatcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCG.GCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGa        <  1:45766/98‑1 (MQ=2)


                                                                                                    cggcGTCGCCCCCCCCGGGGGGGCGTGGATCGAAACACCCGCGGATCGGCGTGACCCGCCCCG...CCCATCGGTCGCTCCCCCCGCGGGGGCGTGGATCGaaa      <  1:349572/98‑1 (MQ=25)


                                                                                                     a.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCCGCGGATCGGCGTGACCCGCCCCG...CCCATCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACt    <  2:722770/101‑1 (MQ=255)


                                                                                                     a.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCCGCGGATCGGCGTGACCCGCCCCG...CCCATCGGTCGCTCCCCCCGCGGGGGCGGGGATCGCAAca    >  2:1143666/1‑100 (MQ=255)


                                                                                                     a.CGTCGCCCCCCCCGGGGGGGCGTGGATCGAACCATCCGCGGATCGGCGTGACCCGCCCCG...CCCATCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACt    <  2:4853442/101‑1 (MQ=255)


GTCATCACCACGCAACCGCCCTGCACCACCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACCCGATCATGG.C.C..CGCCTCAGCGCCGCGCT.GA.CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCCGCGGATCGGCGTGACCCGCCCCG...CCCATCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTAC  >  NC_014034/1397469‑1397667

Base quality scores:


ATCG

< 3 ≤


ATCG

< 15 ≤


ATCG

< 23 ≤


ATCG

< 32 ≤


ATCG

< 39 ≤


ATCG