New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 1397002254 (1.550)35 (0.210) 8/134 19.0 0.15 coding (884/1578 nt) RCAP_rcc01307 hypothetical protein
?NC_014034 1397836 = 154 (0.630)intergenic (+140/+1758) RCAP_rcc01307/RCAP_rcc01309 hypothetical protein/IS66 family transposase
Rejected: Position hash score below cutoff.

Only 100 of 376 total aligned reads displayed.

CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCCTGCGCGGC.CGCA..TCGGCTTCCGCCTGCGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCCGTCTTGAGTGATGGGGCGCGAGCACATGTCGTC  >  NC_014034/1396902‑1397102
                                                                                                        |                                                                                                         
 gTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCCTGCGCGGC.CGCA..TCGGCTTCCGCCTGCGTG.GTCGCTCCCCCCGCGGGGGCGTGGGTCGAAACATc                                                                                                          >  2:1004889/1‑101 (MQ=255)
 gTCGCCCCCCCCGCGGGGGCGTGGATCGAAACAGCCTGCGCGGC.CGCA..TCGGCTTCCGCCTGCGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATc                                                                                                          <  1:2606720/101‑1 (MQ=255)
 gTCGCCCCCCCCGCGGGGGCGTGGATCGAAACAGCCTGCGCGGC.CGCA..TCGGCTTCCGCCTGCGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATc                                                                                                          <  2:4842033/101‑1 (MQ=255)
  tCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCCTGCGCGGC.CGCA..TCGGCTTCCGCCTGCGTG.GTCGCTCCCCCCGCGGGGGCGTGGGTCGAAACATCa                                                                                                         >  1:3577883/1‑101 (MQ=255)
  tCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCCTGCGCGGC.CGCA..TCGGCTTCCGCCTGCGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCa                                                                                                         <  1:2667094/101‑1 (MQ=255)
   cGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCCTGCGCGGC.CGCA..TCGGCTTCCGCCTGCGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAg                                                                                                        >  2:1351571/1‑101 (MQ=255)
    gCTCCCCCCGCGGGGGCGTGGATTGAAACAGCCTGCGCGGC.CGCA..TCGGCTTCCGCCTGCGTG.GTCGATCCCCCCGCGGGGGGGTGGTTCGAAACATAAGc                                                                                                       >  1:4064415/1‑101 (MQ=37)
    ccTCCCCCCGCGGGGGCGGGGATCGAAACAGCCTGCGCGGC.CGCA..TCGGCTTCCGCCTGCGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCacc                                                                                                       <  2:4909765/100‑3 (MQ=255)
     cTCCCCCCGCGGGGGCGTGGATCGAAACTGCGTGCGCGCCATGAAT.TCATCGAGCGCCATCGAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCa                                                                                                         <  1:3411648/101‑1 (MQ=2)
     cTCCCCCCGCGGGGGCGTGGATCGAAACTGCGTGCGCGCCATGAAT.TCATCGAGCGCCATCGAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCa                                                                                                         <  2:2053069/101‑1 (MQ=2)
     cTCCCCCCGCGGGGGCGTGGATCGAAACAGCCTGCGCGGC.CGCA..TCGGCTTCCGCCTGCGTG.GTCGCTCCCTCCGCGGGGGCGTGGATCGAAACATCAGCt                                                                                                      <  2:468931/101‑1 (MQ=255)
      cccccccGCGGGGGCGTGGATCGAAACTGCGTGCGCGCCATGAAT.TCATCGAGCGCCATCGAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCaa                                                                                                        <  1:223403/100‑2 (MQ=2)
       ccccccGCGGGGGCGTGGATCGAAACTGCGTGCGCGCCATGAAT.TCATCGAGCGCCATCGAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCaat                                                                                                       <  1:1519451/101‑3 (MQ=2)
       ccccccGCGGGGGCGTGGATCGAAACAGCCTGCGCGGC.CGCA..TCGGCTTCCGCCTGCGTG.GTCGCTCCCCCCCCGGGGGCGTGGGTCGAAACATCAGCtcg                                                                                                    >  2:1958367/1‑101 (MQ=255)
         ccccGCGGGGGCGTGGATCGAAACTGCGTGCGCGCC.ATGAGTTCATCGAGCGCCATCGAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCaatgc                                                                                                     <  2:4299223/101‑5 (MQ=0)
         ccccGCGGGGGCGTGGATCGAAACAGCCTGCGCGGC.CGCA..TCGGCTTCCGCCTGCGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCtcg.tc                                                                                                 <  2:1537314/101‑1 (MQ=255)
          cccGCGGGGGCGTGGATCGAAACAGCCTGCGCGGC.CGCA..TCGGCTTCCGCCTGCGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCtcg.tcg                                                                                                >  1:1305278/1‑101 (MQ=255)
           ccGCGGGGGCGTGGATCGAAACTGCGTGCGCGCCATGAAT.TCATCGAGCGCCATCGAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCaatgccg                                                                                                   <  1:1141240/101‑7 (MQ=0)
            cgcgGGGGCGTGGATCGAAACTGCGTGCGCGCCATGAAT.TCATCGAGCGCCATCGAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCaatgccga                                                                                                  <  1:4192660/101‑8 (MQ=0)
              cgGGGGCGTGGATCGAAACAGCCTGCGCGGC.CGCA..TCGGCTTCCGCCTGCGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTgg                                                                                            <  1:1394581/101‑1 (MQ=255)
              cgGGGGCGTGGATCGAAACAGCCTGCGCGGC.CGCA..TCGGCTTCCGCCTGCGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTgg                                                                                            <  1:2689497/101‑1 (MQ=255)
               gggggCGTGGATCGAAACAGCCTGCGCGGC.CGCA..TCGGCTTCCGCCTGCGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGt                                                                                           >  1:4378169/1‑101 (MQ=255)
                ggggCGTGGATCGAAACAGCCTGCGCGGC.CGCA..TCGGCTTCCGCCTGCGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGTCAGCTCG.TCGTTGGTc                                                                                          >  2:4542878/1‑101 (MQ=255)
                ggggCGTGGATCGAAACAGCCTGCGCGGC.CGCA..TCGGCTTCCGCCTGCGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAAATCAGCTCG.TCGTTGGTc                                                                                          >  1:3835259/1‑101 (MQ=255)
                  ggCGTGGATCGAAACAGCCTGCGCGGC.CGCA..TCGGCTTCCGCCTGCGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAg                                                                                        <  2:1098654/101‑1 (MQ=255)
                   gCGTGGATCGAAACAGCCTGCGCGGC.CGCA..TCGGCTTCCGCCTGCGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGc                                                                                       <  2:3336316/101‑1 (MQ=255)
                   gCGTGGATCGAAACAGCCTGCGCGGC.CGCA..TCGGCTTCCGCCTGCGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGc                                                                                       >  2:779099/1‑101 (MQ=255)
                     gTGGATCGAAACAGCCTGCGCGGC.CGCA..TCGGCTTCCGCCTGCGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCg                                                                                     <  2:4156915/101‑1 (MQ=255)
                       ggATCGAAACAGCCTGCGCGGC.CGCA..TCGGCTTCCGCCTGCGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGa                                                                                   <  2:3755266/101‑1 (MQ=255)
                       ggATCGAAACAGCCTGCGCGGC.CGCA..TCGGCTTCCGCCTGCGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGa                                                                                   >  1:4006472/1‑101 (MQ=255)
                         aTCGAAACAGCCTGCGCGGC.CGCA..TCGGCTTCCGCCTGCGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.g                                                                                <  1:2350078/101‑1 (MQ=255)
                         aTCGAAACAGCCTGCGCGGC.CGCA..TCGGCTTCCGCCTGCGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.g                                                                                >  2:2654078/1‑101 (MQ=255)
                            gAAACAGCCTGCGCGGC.CGCA..TCGGCTTCCGCCTGCGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATg                                                                             >  1:2536770/1‑101 (MQ=255)
                            gAAACAGCCTGCGCGGC.CGCA..TCGGCTTCCGCCTGCGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATg                                                                             >  2:4320729/1‑101 (MQ=255)
                              aaCAGCCTGGGCGGC.CTCA..TCGGCTTCCGCCTGCGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTc                                                                           <  1:1468078/101‑1 (MQ=255)
                              aaCAGCCTGCGCGGC.CGCA..TCGGCTTCCGCCTGCGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTc                                                                           >  1:3387275/1‑101 (MQ=255)
                               aCAGCCTGCGCGGC.CGCA..TCGGCTTCCGCCTGCGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTcc                                                                          >  1:377430/1‑101 (MQ=255)
                                cAGCCTGCGCGGC.CGCA..TCGGCTTCCGCCTGCGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...g                                                                      >  1:4876284/1‑101 (MQ=255)
                                    cTGCGCGGC.CGCA..TCGGCTTCCGCCTGCGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGc                                                                  >  2:3896688/1‑101 (MQ=255)
                                          ggC.CGCA..TCGGCTTCCGCCTGCGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTccccc                                                            >  2:121791/1‑101 (MQ=255)
                                            c.cGCA..TCGGCTTCCGCCTGCGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCcg                                                          <  2:309148/101‑1 (MQ=255)
                                              cGCA..TCGGCTTCCGCCTGCGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCcgc                                                         <  1:4440504/101‑1 (MQ=255)
                                               gCA..TCGGCTTCCGCCTGCGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCcgcg                                                        >  2:1396510/1‑101 (MQ=255)
                                               gCA..TCGGCTTCCGCCTGCGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCcgcg                                                        >  1:3733803/1‑101 (MQ=255)
                                                   ctCGGCTTCCGCCTGCGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCggg                                                      <  2:2185965/100‑1 (MQ=255)
                                                        cTTCCGCCTGCGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGt                                                 <  1:428246/101‑1 (MQ=255)
                                                        cTTCCGCCTGCGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGt                                                 <  2:2858756/101‑1 (MQ=255)
                                                           ccGCCTGCGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGa                                              <  1:4543198/101‑1 (MQ=255)
                                                            gatcccgccg.gTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCC...GTCGCTCCCCCCGCGGGGGCGTgg                                               >  2:3147751/10‑101 (MQ=2)
                                                            cGCCTGCGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGAt                                             >  2:5052445/1‑101 (MQ=255)
                                                              tcccgccg.gTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCC...GTCGCTCCCCCCGCGGGGGCGTGGAt                                             <  2:1417273/94‑1 (MQ=2)
                                                              ccTGCGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCg                                           <  1:2251628/101‑1 (MQ=255)
                                                              ccTGCGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCg                                           <  1:1847270/101‑1 (MQ=255)
                                                              ccTGCGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCg                                           <  1:3211217/101‑1 (MQ=255)
                                                               cccgccg.gTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCC...GTCGCTCCCCCCGCGGGGGCGTGGATc                                            <  1:2148683/95‑1 (MQ=2)
                                                                tGCGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGaa                                         <  2:2800363/101‑1 (MQ=255)
                                                                ccgccg.gTCGCCCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCC...GTCGCTCCCCCCGCGGGGGCGTGGATCg                                           <  2:886175/96‑1 (MQ=2)
                                                                 gCGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGaaa                                        <  1:2929945/101‑1 (MQ=255)
                                                                  gccg.gTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCC...GTCGCTCCCCCCGCGGGGGCGTGGATCTaa                                         <  2:1968805/98‑1 (MQ=2)
                                                                  cGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAc                                       <  1:5047332/101‑1 (MQ=255)
                                                                   cggcgTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CCGCCACG.TCTTGGAACAGCGTGCC.ATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGaa                                         >  2:2606868/5‑101 (MQ=2)
                                                                   ccg.gTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGaaa                                        <  2:2986738/99‑1 (MQ=2)
                                                                     g.gTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGc                                    >  2:2425870/1‑101 (MQ=255)
                                                                        tCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGc                                    <  1:3145186/101‑1 (MQ=2)
                                                                        tCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGc                                    <  1:3256539/101‑1 (MQ=2)
                                                                         cGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGCAACTGCCgg                                 >  2:3550317/1‑100 (MQ=255)
                                                                         cGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCCGt                                 >  1:69877/1‑101 (MQ=255)
                                                                         cGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CCGCCACG.TCTTGGAACAGCGTGCC.ATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGGTCGAAAcatct                                   >  2:3290159/1‑97 (MQ=0)
                                                                          ggtCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCCGTc                                <  1:1655082/99‑1 (MQ=255)
                                                                          gCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCCGTc                                >  1:4975635/1‑101 (MQ=255)
                                                                          gCTCCCCCCGCGGGGGCGTGGATCGAAAC.CCGCCACG.TCTTGGAACAGCGTGCC.ATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAcaactg                                  >  2:1768225/1‑96 (MQ=2)
                                                                           cTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCAGCGAAGCTGGTCACATCGCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGcgta                                 <  1:474109/101‑4 (MQ=2)
                                                                           cTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCCGTCt                               >  2:369588/1‑101 (MQ=255)
                                                                            tCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGcgtag                                <  2:461368/101‑5 (MQ=2)
                                                                            tCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGcgtag                                <  1:3487685/101‑5 (MQ=2)
                                                                             ccccccGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGcgtaga                               >  1:241835/1‑96 (MQ=2)
                                                                             ccccccGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCCGTCTTg                             <  1:304144/101‑1 (MQ=255)
                                                                               ccccGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGcgtagatc                             <  1:906654/101‑8 (MQ=2)
                                                                                  cgcgGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGcgtagatctcg                          >  2:1908358/1‑91 (MQ=0)
                                                                                  cgcgGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGcgtagatctcg                          <  1:1747539/101‑11 (MQ=0)
                                                                                  cgcgGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCC...GTCGCTCCCCCCGCGGGGGCGTGGATCAAAACGGcgtagatctcg                          >  2:1146080/1‑91 (MQ=0)
                                                                                    cgGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCCGTCTTGAGTGATg                      <  2:3779417/101‑1 (MQ=255)
                                                                                    cgGGGGCATGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCCGTCTTGAGTGATg                      >  1:4690726/1‑101 (MQ=255)
                                                                                     gggggCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCCGTCTTGAGTGGTgg                     >  2:2336852/1‑101 (MQ=255)
                                                                                      ggggCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCCGTCTTGAGTGATggg                    <  1:2837680/101‑1 (MQ=255)
                                                                                      ggggCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCCGTCTTGAGTGATggg                    >  2:2535641/1‑101 (MQ=255)
                                                                                      ggggCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCCGGCTTGAGTGATggg                    >  1:3871911/1‑101 (MQ=255)
                                                                                         gCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCCGTCTTGAGTGATGGGgcg                 >  1:3714759/1‑101 (MQ=255)
                                                                                           gTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCCGTCTTGAGTGATGGGGcgcg               >  1:2013429/1‑101 (MQ=255)
                                                                                            tGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCCGTCTTGAGTGATGGGGCGCGa              >  1:4349962/1‑101 (MQ=255)
                                                                                            tGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCCGTCTTGAGTGATGGGGCGCGa              <  1:331508/101‑1 (MQ=255)
                                                                                                 cGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCCGTCTTGAGTGATGGGGCGCGAGcaca         >  1:641478/1‑101 (MQ=255)
                                                                                                 cGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCCGTCTTGAGTGATGGGGCGCGAGcaca         >  1:1877282/1‑101 (MQ=255)
                                                                                                   aaaCATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCCGTCTTGAGTGATGGGGCGCGAGCACATg       >  2:4453112/1‑101 (MQ=255)
                                                                                                   aaaCATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCCGTCTTGAGTGATGGGGCGCGAGCACATg       >  1:3923065/1‑101 (MQ=255)
                                                                                                   aaaCATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCACCCCCCGCGGGGGCGTGGATCGAAACTGCCGTCTTGAGTGATGGGGCGCGAGCACATg       <  2:343849/101‑1 (MQ=255)
                                                                                                   aaaCATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGT.C...GTCGCTCCCCCCCCGGGGGGGGGGGTCGGAAATGCCGGCTTTGGGGAAGGGGGGGGGGcacaagg      >  1:1032678/1‑98 (MQ=255)
                                                                                                    aaCATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCCGTCTTGAGTGATGGGGCGCGAGCACATgt      <  2:440384/101‑1 (MQ=255)
                                                                                                      cATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCCGTCTTGAGTGATGGGGCGCGAGCACATgtcg    <  2:2075960/101‑1 (MQ=255)
                                                                                                       aTCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCCGTCTTGAGTGATGGGGCGCGAGCACATgtcgt   <  2:69867/101‑1 (MQ=255)
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CGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAGCCTGCGCGGC.CGCA..TCGGCTTCCGCCTGCGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCCGTCTTGAGTGATGGGGCGCGAGCACATGTCGTC  >  NC_014034/1396902‑1397102

Base quality scores:  ATCG  < 3 ≤  ATCG  < 19 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG