New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 1397000250 (1.570)49 (0.310) 9/130 17.9 0.20 coding (882/1578 nt) RCAP_rcc01307 hypothetical protein
?NC_014034 1397903 = 147 (0.600)intergenic (+207/+1691) RCAP_rcc01307/RCAP_rcc01309 hypothetical protein/IS66 family transposase
Rejected: Position hash score below cutoff.

Only 100 of 464 total aligned reads displayed.

GACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..GCCT.GCGCG.GC.CGCA.TCGG.CT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCCGTCTTGAGTGATGGGGCGCGAGCACATGTCG  >  NC_014034/1396900‑1397100
                                                                                                                |                                                                                                         
 gcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAT.GGCTATGGCG.GC.AGTG.TCAG.GT.T.TTC.CAG..CGGC.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAc                                                                                                           <  1:716399/100‑1 (MQ=2)
 ctgTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC...GCTG.GCGCGCGC.CGCG.CCGG.ATCTTTGT.CTG..CGCG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAc                                                                                                           <  2:230965/99‑1 (MQ=9)
  tgTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC...GCTG.GCGCGCGC.CGCG.CCGG.ATCTTTGT.CTG..CGCG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAct                                                                                                          >  1:1780662/2‑100 (MQ=9)
  ggTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA...ACT.GACC...C.GGCA.ACGG.CC.TATGCGCTGGACGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActa                                                                                                         <  1:2707310/100‑3 (MQ=2)
  cGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..GCCT.GCGCG.GC.CGCA.TCGG.CT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAt                                                                                                         <  1:4972877/101‑1 (MQ=255)
   gTCGCCCCCCCCGCGGGGGCGTGGATCGAAACA..GCCT.GCGCG.GC.CGCA.TCGG.CT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATc                                                                                                        <  1:2606720/101‑1 (MQ=255)
    tCGCCCCCCCCGCGGGGGCGTGGATCGAAACA..GCCT.GCGCG.GC.CGCA.TCGG.CT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCa                                                                                                       <  2:2644406/101‑1 (MQ=255)
    gcGCCCCCCCCGCGGGGGCGTGGATCGAAACA..GCCT.GCGCG.GC.CGCA.TCGG.CT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTTGATCGAAACATCa                                                                                                       <  2:2129897/100‑1 (MQ=255)
     cGCTCCCCCCGCGGGGGCGTGGATCGAAACT..GCGT.GCGCG.CCATGAATTCAT.CG.AGCGC.CAT..CGAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACac                                                                                                         <  2:4893606/101‑2 (MQ=2)
      gCTCCCCCCGCGGGGGCGTGGATCGAAACA...ACT.GACC...C.GGCA.ACGGACTATGCGC.TGGA.CGCG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAccacacc                                                                                                     >  1:1638978/1‑95 (MQ=2)
      gCTCCCCCCGCGGGGGCGTGGATCGAAACA...ACT.GACC...C.GGCA.ACGG.CC.TATGCGCTGGACGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActacacc                                                                                                     >  1:3393917/1‑95 (MQ=2)
      gCTCCCCCCGCGGGGGCGTGGATCGAAACA...ACT.GACC...C.GGCA.ACGG.CC.TATGCGCTGGACGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActacacc                                                                                                     <  1:44290/101‑7 (MQ=2)
      gCTCCCCCCGCGGGGGCGTGGATCGAAACA...ACT.GACC...C.GGCA.ACGG.CC.TATGCGCTGGACGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActacacc                                                                                                     >  2:4741744/1‑95 (MQ=2)
      gCTCCCCCCGCGGGGGCGTGGATCGAAAC...GCTG.GCGCGCGC.CGCG.TCGG.ATCTTTGT.CTG..CGCG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActcggc                                                                                                      <  1:4247461/101‑6 (MQ=9)
      gCTCCCCCCGCGGGGGCGTGGATCGAAAC...GCTG.GCGCGCGC.CGCG.CCGG.ATCTTTGT.CTG..CGCG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActcggc                                                                                                      >  1:1927665/1‑96 (MQ=9)
       ccccccccGCGGGGGCGTGGGTCCAAACATTGCTT.TGGCG.GC.AGTG.TCAG.GT.T.TTC.CAG..CGGC.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAcccgcca                                                                                                     <  2:2766090/99‑7 (MQ=2)
       ccccccccGCGGGGGCGTGGATCGAAACT..GCGT.GCGCG.CCATGAATTCAT.CG.AGCGC.CAT..CGAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCa                                                                                                       <  1:4471075/99‑1 (MQ=2)
       cTCCCCCCGCGGGGGCGTGGATCGAAAC...GCTG.GCGCGCGC.CGCG.CCGG.ATCTTTGT.CTG..CGCG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActcggcc                                                                                                     <  1:2835879/101‑7 (MQ=9)
        tCCCCCCGCGGGGGCGTGGATCGAAAC...GCTG.GCGCGCGC.CGCG.CCGG.ATCTTTGT.CTG..CGCG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActcggcct                                                                                                    >  2:4686230/1‑94 (MQ=9)
         ccccccGCGGGGGCGTGGATCGAAACT..GCGT.GCGCG.CCATGAATTCAT.CG.AGCGC.CAT..CGAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCaat                                                                                                     <  1:1519451/101‑3 (MQ=2)
         ccccccGCGGGGGCGTGGATCGAAACA..GCCT.GCGCG.GC.CGCA.TCGG.CT.TCCGC.CTG..CGTG.GTCGCTCCCCCCCCGGGGGCGTGGGTCGAAACATCAGCtcg                                                                                                  >  2:1958367/1‑101 (MQ=255)
         ccccccGCGGGGGCGTGGATCGAAAC...GCTG.GCGCGCGC.CGCG.CCGG.ATCTTTGT.CTG..CGCG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActcggcctc                                                                                                   >  2:3037009/1‑93 (MQ=9)
          cccccGCGGGGGCGTGGATCGAAACA..GCCT.GCGCG.GC.CGCA.TCGG.CT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCtcg.t                                                                                                <  1:3876262/101‑1 (MQ=255)
          cccccGCGGGGGCGTGGATCGAAAC...GCTG.GCGCGCGC.CGCG.CCGG.ATCTTTGT.CTG..CGCG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActcggcctcg                                                                                                  <  1:1301550/101‑10 (MQ=9)
          cccccGCGGGGGCGTGGATCGAAAC...GCTG.GCGCGCGC.CGCG.CCGG.ATCTTTGT.CTG..CGCG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActcggcctcg                                                                                                  <  2:4921676/101‑10 (MQ=9)
           ccccGCGGGGGCGTGGATCGAAACA..GCCT.GCGCG.GC.CGCA.TCGG.CT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCtcg.tc                                                                                               >  2:3471824/1‑101 (MQ=255)
           ccccGCGGGGGCGTGGATCGAAACA..GCCT.GCGCG.GC.CGCA.TCGG.CT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCtcg.tc                                                                                               <  2:1537314/101‑1 (MQ=255)
            cccGCGGGGGCGTGGATCGAAACA..GCCT.GCGCG.GC.CGCA.TCGG.CT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCtcg.tcg                                                                                              <  2:2885350/101‑1 (MQ=255)
             ccGCGGGGGCGTGGATCGAAACT..GCGT.GCGCG.CCATGAATTCAT.CG.AGCGC.CAT..CGAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCaatgccg                                                                                                 <  1:1141240/101‑7 (MQ=0)
             ccGCGGGGGCGTGGATCGAAACT..GCGT.GCGCG.CCATGAATTCAT.CG.AGCGC.CAT..CGAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCaatgccg                                                                                                 <  1:2469531/101‑7 (MQ=0)
             ccGCGGGGGCGTGGATCGAAACA..GCCT.GCGCG.GC.CGCA.TCGG.CT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTcg.tcgt                                                                                             <  1:2943651/101‑1 (MQ=255)
              cgcgGGGGCGTGGATCGAAACT..GCGT.GCGCG.CCATGAATTCAT.CG.AGCGC.CAT..CGAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCaatgccga                                                                                                <  2:2810741/101‑8 (MQ=0)
              cgcgGGGGCGTGGATCGAAACT..GCGT.GCGCG.CCATGAATTCAT.CG.AGCGC.CAT..CGAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCaatgccga                                                                                                <  1:4192660/101‑8 (MQ=0)
              cgcgGGGGCGTGGATCGAAACA..GCCT.GCGCG.GC.CGCA.TCGG.CT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGtt                                                                                            <  1:3333269/101‑1 (MQ=255)
               gcgGGGGCGTGGATCGAAACA..GCCT.GCGCG.GC.CGCA.TCGG.CT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTg                                                                                           >  1:3748730/1‑101 (MQ=255)
                cgGGGGCGTGGATCGAAACA..GCCT.GCGCG.GC.CGCA.TCGG.CT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTgg                                                                                          >  1:639669/1‑101 (MQ=255)
                cgGGGGCGGGGATCGAAACA..GCCT.GCGCG.GC.CGCA.TCGG.CT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTgg                                                                                          <  1:2315381/101‑1 (MQ=255)
                 gggggCGTGGATCGAAACA..TCCT.GCGCG.GC.CGCA.TCGG.CT.TCCGC.CTG..CGCG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCCCG.TCGTTGGt                                                                                         >  1:877486/1‑101 (MQ=255)
                  ggggGGTGGATCCAAACA..GCCT.GCGCG.GC.CGCA.TCGG.TT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTc                                                                                        <  1:4875229/101‑1 (MQ=255)
                  ggggCGTGGATCGAAACA..GCCT.GCGCG.GC.CGCA.TCGG.CT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTc                                                                                        <  2:3998185/101‑1 (MQ=255)
                     gCGTGGATCGAAACA..GCCT.GCGCG.GC.CGCA.TCGG.CT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGc                                                                                     <  2:3336316/101‑1 (MQ=255)
                     gCGTGGATCGAAACA..GCCT.GCGCG.GC.CGCA.TCGG.CT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGc                                                                                     >  2:779099/1‑101 (MQ=255)
                       gTGGATCGAAACA..GCCT.GCGCG.GC.CGCA.TCGG.CT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCg                                                                                   <  1:3623409/101‑1 (MQ=255)
                         ggATCGAAACA..GCCT.GCGCG.GC.CGCA.TCGG.CT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGa                                                                                 <  2:3755266/101‑1 (MQ=255)
                             cGAAACA..GCCT.GCGCG.GC.CGCA.TCGG.CT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GAt                                                                            >  2:4433771/1‑101 (MQ=255)
                               aaaCA..GCCT.GCGCG.GC.CGCA.TCGG.CT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGt                                                                          >  2:4302216/1‑101 (MQ=255)
                                aaCA..GCCT.GCGCG.GC.CGCA.TCGG.CT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTc                                                                         <  1:1694266/101‑1 (MQ=255)
                                 aCA..GCCT.GCGCG.GC.CGCA.TCGG.CT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTcc                                                                        <  1:1439366/101‑1 (MQ=255)
                                 aCA..GCCT.GCGCG.GC.CGCA.TCGG.CT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTcc                                                                        >  1:377430/1‑101 (MQ=255)
                                   a..GCCT.GCGCG.GC.CGCA.TCGG.CT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...Gt                                                                   >  1:2400336/1‑101 (MQ=255)
                                           gcgcG.GC.CGCA.TCGG.CT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTc                                                              >  2:1358561/1‑101 (MQ=255)
                                            cgcg.GC.CGCA.TCGG.CT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTcc                                                             >  1:3527274/1‑101 (MQ=255)
                                               g.gC.CGCA.TCGG.CT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTccccc                                                          >  2:1131640/1‑101 (MQ=255)
                                                 gC.CGCA.TCGG.CT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTcccccc                                                         <  2:1305157/101‑1 (MQ=255)
                                                  c.cGCA.CCGG.CT.TCCGC.CTG..CGGG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCTCTCCCCCcg                                                        <  2:3265388/101‑1 (MQ=255)
                                                       a.TCGG.CT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCggg                                                    >  2:56684/1‑101 (MQ=255)
                                                         tCGG.CT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCgggg                                                   <  2:1894191/101‑1 (MQ=255)
                                                           gg.CT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGAGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGc                                                 <  1:4368236/101‑1 (MQ=255)
                                                                 tCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTgg                                             <  2:1969976/101‑1 (MQ=255)
                                                                 tCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTgg                                             >  2:1006465/1‑101 (MQ=255)
                                                                      gatcccgccg.gTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCC...GTCGCTCCCCCCGCGGGGGCGTgg                                             >  2:3147751/10‑101 (MQ=2)
                                                                        tcccgccg.gTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCC...GTCGCTCCCCCCGCGGGGGCGTGGAt                                           <  2:1417273/94‑1 (MQ=2)
                                                                         cccgccg.gTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCC...GTCGCTCCCCCCGCGGGGGCGTGGATc                                          <  1:2148683/95‑1 (MQ=2)
                                                                         cccgccg.gTCGCGCCCCCCGCGGGGGCGTGGATCGAAGCATCAGCTTGACCGCATCGAAGCTGGTCACATCGCC...GTCGCTCCCCCCGCGGGGGCGTGGATc                                          <  2:1176136/95‑1 (MQ=2)
                                                                          ccgccg.gTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCC...GTCGCTCCCCCCGCGGGGGCGTGGATCg                                         <  2:438607/96‑1 (MQ=2)
                                                                          cagcggcgTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CCGCCACG.TCTTGGAACAGCGTGCC.ATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATc                                          >  1:4105994/8‑101 (MQ=2)
                                                                            cGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAc                                     <  1:5047332/101‑1 (MQ=255)
                                                                              cg.gTGGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAc                                     <  1:4729543/100‑1 (MQ=2)
                                                                              cg.gTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAc                                     <  1:325789/100‑1 (MQ=2)
                                                                               g.gTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGc                                  >  2:2425870/1‑101 (MQ=255)
                                                                                 gTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAcgg                                   >  2:905408/1‑99 (MQ=2)
                                                                                  tCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGc                                  >  2:3784331/1‑101 (MQ=2)
                                                                                   cGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CCGCCACG.TCTTGGAACAGCGTGCC.ATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAcaact                                 >  1:2244894/1‑97 (MQ=2)
                                                                                   cGCTCCCCCCGCGGGGGCGTGGATCGAAAC.CCGCCACG.TCTTGGAACAGCGTGCC.ATTGGCCCCGGTCGCTCCCCCCGCGGGGCCGTGGATCGAAAcaact                                 >  2:3079121/1‑97 (MQ=2)
                                                                                    gCTCCCCCCGCGGGGGCGTGGATCGAGACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGcgt                                <  1:1866279/101‑3 (MQ=2)
                                                                                    gCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGcgt                                <  1:3416887/101‑3 (MQ=2)
                                                                                    gCTCCCCCCGCGGGGGCGTGGATCGAAAC.CCGCCACG.TCTTGGAACAGCGTGCC.ATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAcaactg                                >  2:3579539/1‑96 (MQ=2)
                                                                                     cTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCCGTCt                             >  2:369588/1‑101 (MQ=255)
                                                                                      tCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTTGACCGCATCGAAGCTGGTCACATCGCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGcgtag                              <  2:461368/101‑5 (MQ=2)
                                                                                      tCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCCGTCtt                            <  1:2226994/101‑1 (MQ=255)
                                                                                       ccccccGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCCGTCTTg                           <  1:2677637/101‑1 (MQ=255)
                                                                                       ccccccGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCCGTCTTg                           <  1:304144/101‑1 (MQ=255)
                                                                                       ccccccGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCCGTCTTg                           >  1:4052898/1‑101 (MQ=255)
                                                                                                ggggCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCCGTCTTGAGTGATggg                  >  1:3977350/1‑101 (MQ=255)
                                                                                                ggggCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCCGTCTTGAGTGATggg                  >  2:2535641/1‑101 (MQ=255)
                                                                                                  ggCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCCGTCTTGAGTGATGGCgc                <  2:4485193/101‑1 (MQ=255)
                                                                                                   gCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCCGTCTTGAGTGATGGGgcg               >  1:3714759/1‑101 (MQ=255)
                                                                                                    cGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCCGTCTTGAGTGATGGGgcgg              >  2:4163228/1‑100 (MQ=255)
                                                                                                    cGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCCGTCTTGAGTGATGGGgcgc              >  1:3146646/1‑101 (MQ=255)
                                                                                                     gTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCCGTCTTGAGTGATGGGGcgcg             >  1:2013429/1‑101 (MQ=255)
                                                                                                      tGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCCGTCTTGAGTGATGGGGCGCGa            >  1:1374835/1‑101 (MQ=255)
                                                                                                      tGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCCGTCTTGAGTGATGGGGCGCGa            <  1:4559465/101‑1 (MQ=255)
                                                                                                       ggATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCCGTCTTGAGTGATGGGGcgcggg           >  1:3222245/1‑99 (MQ=255)
                                                                                                        gATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCCGTCTTGAGTGATGGGGCGCGAGc          <  2:703746/101‑1 (MQ=255)
                                                                                                          tCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCCGTCTTGAGTGATGGGGCGCGAGcac        <  1:958945/101‑1 (MQ=255)
                                                                                                          tCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCCGTCTTGAGTGATGGGGCGCGAGcac        >  1:3844146/1‑101 (MQ=255)
                                                                                                          acGAAACATCAGCTCG.TNGTTGGTCAGCCGGAC.GATGCCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCCGTCTTGAGTGATGGGGCGCGAGcac        <  2:1734607/100‑1 (MQ=255)
                                                                                                            gAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCCGTCTTGAGTGATGGGGCGCGAGCACAt      <  2:2062243/101‑1 (MQ=255)
                                                                                                             aaaCATCAGCTCG.TCGTTGGTCAGCCGGAC.GATTTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCCGTCTTGAGTGATGGGGCGCGAGCACATg     <  1:4302533/101‑1 (MQ=255)
                                                                                                             aaaCATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGT.C...GTCGCTCCCCCCCCGGGGGGGGGGGTCGGAAATGCCGGCTTTGGGGAAGGGGGGGGGGcacaagg    >  1:1032678/1‑98 (MQ=255)
                                                                                                                |                                                                                                         
GACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..GCCT.GCGCG.GC.CGCA.TCGG.CT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCG.TCGTTGGTCAGCCGGAC.GATGTCC...GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCCGTCTTGAGTGATGGGGCGCGAGCACATGTCG  >  NC_014034/1396900‑1397100

Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 26 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG