New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 164000521 (0.090)128 (0.550) 66/190 5.1 0.86 intergenic (+85/‑60) mccB/mccA methylcrotonoyl‑CoA carboxylase subunit beta/methylcrotonoyl‑CoA carboxylase subunit alpha
?NC_014034 1640006 = 21 (0.090)intergenic (+86/‑59) mccB/mccA methylcrotonoyl‑CoA carboxylase subunit beta/methylcrotonoyl‑CoA carboxylase subunit alpha
Rejected: Position hash score below cutoff.

Only 100 of 144 total aligned reads displayed.

GATCTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGATA.TTTGGGGCAAGATG.AAACCCATCCC.TTT.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....G.....G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCC  >  NC_014034/1639905‑1640088
                                                                                                                   |                                                                                                
gATCTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGGGA.TTTTGGGGAAGATG.AAAACCATCCC.TTT.CA.TCTTTCCCCAAATATCCC.GCGGGGCCC...cg..g....g                                                                                                  >  1:145640/1‑101 (MQ=37)
gATCTTCCGGATGTGACTTTCGATGCCTCCGGCGGAGAGA.TTTGAGGCGAAATG.AAACCCATCCC.CTT.CA.TTTTGCCCCACATAAACC.AGGGGGCCC...gc..g....g                                                                                                  >  1:1568094/1‑101 (MQ=255)
 tttttCCGGATGTGTCTTTCGATGCCTCCGGCGGGGATT.TTTGGGGCAAGATA.AACCCCACCCT.TTT.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...gg..g....g.....g                                                                                            <  2:1067666/98‑1 (MQ=25)
 aTCTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGGGA.TTTTTGGGCAGATGAAAAACCACCCC.TTT.CT.CTTTTCCCCAAAAATCCC.CGGGGGCCG...gg..g....g                                                                                                  >  2:1832357/1‑101 (MQ=255)
 aTCTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGATA.TTTGGGGCAAGATG.AAACCCATCCC.TTT.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...gg..g....g.....g                                                                                            <  1:610061/101‑1 (MQ=255)
   cTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGGGA.TTTTGGGCAAGAAA.AAAACCAACCC.CTT.CT.TTTTCCCCCCAAAAACCC.CGGGGGCCC...gg..g....g.....ggc                                                                                          >  1:3882275/1‑99 (MQ=255)
   cTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGATA.TTTGGGGCAAGATG.AAACCCATCCC.TTT.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...gg..g....g.....ggc                                                                                          <  1:2665870/101‑3 (MQ=255)
   cTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGATA.TTTGGGGCAAGATG.AAACCCATCCC.TTT.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...gg..g....g.....ggc                                                                                          <  2:3519984/101‑3 (MQ=255)
     tCCGGATGTGACTTTCGATGCCTCCGGCGGGGATA.TTTGGGGCAAGATG.AAACCCATCCC.TTT.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...gg..g....g.....ggcag                                                                                        <  2:3817440/101‑5 (MQ=255)
     tCCGGATGTGACTTTCGATGCCTCCGGCGGGGATA.TTTGGGGCAAGATG.AAACCCATCCC.TTT.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...gg..g....g.....ggcag                                                                                        <  1:659115/101‑5 (MQ=255)
      ccGGATGTGACTTTCGATGCCTCCGGCGGGGGGA.TTTGGGGGAAGATG.AAAAACATCCC.CTT.CATTTTTCCCCCAAAAACCCC.CGGGGCCCC...GC..G....G.....g.....gg...cg                                                                                >  2:117226/1‑100 (MQ=255)
        ggATGTGACTTTCGATGCCTCCGGCGGGGGTATTTTGGGGCAA.ATG.AAAACCATCCC.TTT.CT.TCTTTCCCCCAATAACCCGGGGGGGCCC...gg..g....g.....ggaaggc                                                                                      >  2:2146932/1‑95 (MQ=255)
         gATGTGACTTTCGATGCCTCCGGCGGGGATA.TTTGGGGCAAGATG.AAACCCATCCC.TTT.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...gg..g....g.....ggcagcgcc                                                                                    <  2:2273266/101‑9 (MQ=255)
          aTGTGACTTTCGATGCCTCCGGCGGGGATA.TTTGGGGCAAGATG.AAACCCATCCC.TTT.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...gg..g....g.....ggcagcgccc                                                                                   <  1:1109276/101‑10 (MQ=255)
           tgtgACTTTCGATGCCTCCGGCGGGGATA.TTTTGGGGAAGATG.AAAACCATCCC.TTT.CA.TCTTTCCCCAAAAATCCC.GGGGGGGCC...gg..g....g.....gggagcgcccc                                                                                  >  2:4057149/1‑91 (MQ=21)
                          cTCCGGCGGGGGTA.TTTGGGGCAAGATG.AAACCCATCCC.TTT.TA.TCTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCCCCCCTTCCGccc                                                               >  2:1497780/1‑100 (MQ=18)
                               ggggggATT.TTTGGGGAAAAAAT.AAACCCCTCCC.TTT.TC.TTTTGCCCCAAATTTCCC.GGGGGGGCC...GG..G....G.....GGC...CGCCCCCCCCCGCCACTTCCGCCACggg                                                           <  1:4455401/99‑1 (MQ=255)
                               gcggGGATA.TTTGGGGCAAGATG.AAACCCATCCC.TTT.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACgggg                                                          >  1:5034818/1‑101 (MQ=21)
                                cggGGATA.TTTGGGGCAAGATG.AAACCCATCCC.TTT.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGc                                                         >  2:1095931/1‑101 (MQ=25)
                                cggGGACA.TTTGGGGCAAGATG.AAACCCATCCC.TTT.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCCCGGGGc                                                         >  2:700724/1‑101 (MQ=21)
                                 ggggATA.TTTGGGGCAAGATG.AAACCCATCCC.TTT.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCa                                                        >  2:2004887/1‑101 (MQ=25)
                                  gggATA.TTTGGGGCAAGATG.AAACCCATCCC.TTT.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAg                                                       >  1:3731726/1‑101 (MQ=25)
                                  gggATA.TTTGGGGCAAGATG.AAACCCATCCC.TTT.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAg                                                       >  1:3207545/1‑101 (MQ=21)
                                   ggATA.TTTGGGGCAAGATG.AAACCCATCCC.TTT.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAgc                                                      >  1:1455477/1‑101 (MQ=25)
                                   ggATA.TTTGGGGCAAGATG.AAACCCATCCC.TTT.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAgc                                                      >  2:4532976/1‑101 (MQ=21)
                                   ggATA.TTGGGGACAAGATG.ACCCCCTCCCC.TTT.CA.TCTGCCCCCAAATAGCCG.GGGGGGCGG...GG..GGGGCG.....G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAgc                                                      <  2:2453547/101‑1 (MQ=255)
                                    gATA.TTTGGGGCAAGATG.AAACCCATCCC.TTT.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAgcg                                                     >  1:923428/1‑101 (MQ=25)
                                    gATA.TTTGGGGCAAGATG.AAACCCATCCC.TTT.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAgcg                                                     >  1:1918658/1‑101 (MQ=25)
                                     ata.tTTGGGGCAAGATG.AAACCCATCCC.TTT.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAgcgc                                                    >  2:879019/1‑101 (MQ=21)
                                       a.tTTGGGGCAAGATG.AAACCCATCCC.TTT.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGccc                                                  >  1:3844587/1‑101 (MQ=25)
                                       a.tTTGGGGCAAGATG.AAACCCATCCC.TTT.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGccc                                                  >  2:3315722/1‑101 (MQ=25)
                                         ttggggaCAAGATA.ACCCCCATCCT.TTT.CT.TCTCGCCCAAAATACCCG.GGGGCGCCG...GG..GGGGCG.....G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGcccc                                                 <  2:3395228/98‑1 (MQ=255)
                                          ttGGGGCAAGATG.AAACCCATCCC.TTT.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCg                                                >  2:562803/1‑101 (MQ=21)
                                          ttGGGGCAAGATA.AAACCCATCCC.TTT.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCg                                                >  1:2743243/1‑101 (MQ=21)
                                          tgggggGAAGAAA.AACCCCCCCCC.TTT.CC.TCCTGCCCAAAATGCCCG.GGGGGGCCC...GG..G....G.....GGC...CGGCCCCCCCCGCCACTTCCGCCACGGGGCAGCGcccc                                                 <  2:339776/99‑1 (MQ=9)
                                           tGGGGCAAGATG.AAACCCATCCC.TTT.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCgg                                               >  2:2402813/1‑101 (MQ=25)
                                           tGGGGCAAGATG.AAACCCATCCC.TTT.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCgg                                               >  2:3809955/1‑101 (MQ=25)
                                             gggCAAGATG.AAACCCATCCC.TTT.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGcc                                             >  1:4829713/1‑101 (MQ=25)
                                               gCAAGATG.AAACCCATCCC.TTT.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGt                                           >  2:4094378/1‑101 (MQ=21)
                                                cAAGATG.ACCCCCCCCCT.TTC.CA.TTTTCCCCAAAATACCCG.GGGGGGCCG...GG..G....G.....GGCAC.CC...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGtt                                          <  2:2438211/101‑1 (MQ=255)
                                                cAAGATG.AAACCCATCCC.TTT.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGtt                                          >  1:754348/1‑101 (MQ=21)
                                                cAAGATG.AAACCCATCCC.TTT.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGtt                                          >  1:3071358/1‑101 (MQ=25)
                                                cAAGATG.AAACCCATCCA.TTT.CA.TCTTGCCCCAAATATACC.GGGGGGCCC...GGTAG....GAA...G.....CG...CCCTCCGCCACTTCCGCCACACGGCAGCGCCCCGGccccg                                          >  2:1867362/1‑98 (MQ=19)
                                                 aaGATG.AAACCCATCCC.TTT.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTg                                         >  1:2719933/1‑101 (MQ=25)
                                                  aGATG.AAACCCATCCC.TTT.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCTCCACGGGGCAGCGCCCCGGCCGTTgc                                        >  2:3086703/1‑100 (MQ=21)
                                                  aGATG.AAACCCATCCC.TTT.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGa                                        >  2:3506602/1‑101 (MQ=25)
                                                  aGATG.AAACCCATCCC.TTT.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGa                                        >  2:1940625/1‑101 (MQ=25)
                                                    aTG.AAACCCATCCC.TTT.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACg                                      >  2:2295140/1‑101 (MQ=21)
                                                     tG.AAACCCATCCC.TTT.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGa                                     >  2:3314490/1‑101 (MQ=25)
                                                      g.AAACCCATCCC.TTT.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGaa                                    >  1:4830120/1‑101 (MQ=25)
                                                      g.AAACCCATCCC.TTT.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGaa                                    >  2:3328186/1‑101 (MQ=25)
                                                      g.AAACCCATCCC.TTT.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGaa                                    >  1:1556058/1‑101 (MQ=25)
                                                       aaaaCCCCTCCCTTTT.CC.TCTTCCCCAAAATCCCCG.GGGGGGCCG...GG..G....G.....GC....CGCCCCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGa                                     <  2:1938192/100‑1 (MQ=255)
                                                        aaaCCCATCCC.TTT.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAg                                   >  1:3963705/1‑101 (MQ=25)
                                                        aaaCCCATCCC.TTT.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAg                                   >  2:3742600/1‑101 (MQ=25)
                                                        aaaCCAATCCC.TTT.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGACACGGGGCAGCGCCCCGGCCGTTGACGAAg                                   >  1:324899/1‑101 (MQ=21)
                                                         aaCCCATCCC.TTT.CA.TATTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAgg                                  >  2:2803272/1‑101 (MQ=25)
                                                             cccccc.TTTCCA.TCTCCCCCAAAATACCCG.GGGGGGCCG...GG..G....G.....GGCCC.CC...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGgaga                               <  2:1436448/98‑1 (MQ=255)
                                                             cccccc.TTT.CA.TCTCG.CCCAAAAGCCCC.GGGGGGCCC...GG..G....G.....GGGCCCCC...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGAc                              <  1:1580261/98‑1 (MQ=255)
                                                             cATCCC.TTT.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGAc                              >  2:4534235/1‑101 (MQ=25)
                                                               tCCC.TTT.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACcg                            >  2:824212/1‑101 (MQ=25)
                                                                ccc.TTT.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACcgc                           >  2:3767347/1‑101 (MQ=25)
                                                                ccc.TTT.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACcgc                           >  1:3600341/1‑101 (MQ=25)
                                                                ccc.TTT.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGCTGACGAAGGAGACcgc                           >  2:27481/1‑101 (MQ=21)
                                                                 cc.TTT.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACcgcg                          >  1:262078/1‑101 (MQ=25)
                                                                    ttt.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGAt                        >  1:2304764/1‑101 (MQ=25)
                                                                     tt.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATg                       >  2:4817480/1‑101 (MQ=25)
                                                                     tt.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATg                       >  1:5050196/1‑101 (MQ=25)
                                                                      t.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGt                      >  2:1231406/1‑101 (MQ=25)
                                                                      t.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGt                      >  1:4055126/1‑101 (MQ=25)
                                                                       ttttcttcgtcccAAAAATCCC.CGGGGGCCCCGGGG..G....G.....G.....CGCCCCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGa                         <  1:2026910/91‑1 (MQ=255)
                                                                        cA.TCTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGtt                     >  1:2158369/1‑101 (MQ=25)
                                                                         a.TCTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGttt                    >  1:4745977/1‑101 (MQ=25)
                                                                           tCTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTc                   >  2:3767922/1‑101 (MQ=25)
                                                                            cTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGCCCGCGATGTTTCa                  >  1:3713336/1‑101 (MQ=25)
                                                                            cTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCa                  >  1:1392896/1‑101 (MQ=25)
                                                                            cTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCa                  >  1:3373030/1‑101 (MQ=25)
                                                                             ttGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCaa                 >  1:34394/1‑101 (MQ=25)
                                                                             ttGCCACAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCaa                 >  2:268856/1‑101 (MQ=25)
                                                                             tgtccccAAATATGGC.GGGGGGCCC...GG..G....GGGGCAG.....CC...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCa                  <  2:587731/98‑1 (MQ=255)
                                                                              tGCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCaaa                >  1:90874/1‑101 (MQ=25)
                                                                               gCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCaaaa               >  2:52350/1‑101 (MQ=25)
                                                                               gCCCCAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCaaaa               >  1:2966012/1‑101 (MQ=25)
                                                                                ccccAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCCCGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAg              >  1:921750/1‑101 (MQ=25)
                                                                                   cAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGCTGTTTCAAAAGCTc           >  2:1458157/1‑101 (MQ=25)
                                                                                   cAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATc           >  1:4346828/1‑101 (MQ=25)
                                                                                   cAAATATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATc           >  1:3177635/1‑101 (MQ=25)
                                                                                    aaaTATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATcc          >  1:37101/1‑101 (MQ=25)
                                                                                     aaTATCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCt         >  1:1001191/1‑101 (MQ=25)
                                                                                      atatCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTg        >  1:3496126/1‑101 (MQ=37)
                                                                                      atatCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTg        >  1:1327630/1‑101 (MQ=37)
                                                                                      atatCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGAAGACCGCGATGTTTCAAAAGATCCTg        >  2:4831687/1‑101 (MQ=25)
                                                                                        atCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGAt      >  1:2740398/1‑101 (MQ=37)
                                                                                        atCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGAt      >  1:2703832/1‑101 (MQ=37)
                                                                                         tCCC.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATc     >  1:1326618/1‑101 (MQ=37)
                                                                                          ccc.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCg    >  1:61646/1‑101 (MQ=37)
                                                                                           cc.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCCGCGCCCCGGCCGTCGGCGAAGGAGGCCGGGATCTTTCAAAAGATCCTCAtatc   >  1:1222201/1‑98 (MQ=16)
                                                                                            c.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGcc  >  1:2385509/1‑101 (MQ=37)
                                                                                            c.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGcc  >  1:1394266/1‑101 (MQ=37)
                                                                                            c.GGGGGGCCC...GG..G....GGGCA.G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGcc  >  2:677817/1‑101 (MQ=37)
                                                                                                                   |                                                                                                
GATCTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGATA.TTTGGGGCAAGATG.AAACCCATCCC.TTT.CA.TCTTGCCCCAAATATCCC.GGGGGGCCC...GG..G....G.....G.....CG...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCC  >  NC_014034/1639905‑1640088

Base quality scores:  ATCG  < 3 ≤  ATCG  < 16 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG