New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 744807	36 (0.180)	20 (0.100)	9/164	21.1	0.31	intergenic (+192/+20)	idi2/bchO	isopentenyl‑diphosphate delta‑isomerase/magnesium‑chelatase BchO
	?	NC_014034	1699965 =	53 (0.220)					intergenic (+38/+5)	RCAP_rcc01568/purF	RES domain family protein/amidophosphoribosyltransferase
Rejected: Position hash score below cutoff.

TTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTCGATCCG  >  NC_014034/744710‑744907                                                                                                  |                                                                                                     tttCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGGCGCCTCGGGcc                                                                                                   >  2:540863/1‑101 (MQ=255)       tCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGGCGCCTCGGGCCCGcccc                                                                                             >  2:3005217/1‑100 (MQ=255)       tCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGGCGCCCCGGGCCTGcccc                                                                                             >  1:4786631/1‑100 (MQ=255)              cggTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGGCGCCCCGGGCCTGCCCCCGGCgga                                                                                      >  1:3536043/1‑99 (MQ=18)                    aGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGGCGCCCCGGGCCTGCCCGAGGCGAAATCTCa                                                                                >  1:1976687/1‑101 (MQ=255)                       cTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGCCGCCCCGGGGCTGCCCGCGGGGGAAACCCAccc                                                                             >  1:4334138/1‑101 (MQ=14)                                 ccTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCAACCCTCGAGCCAg                                                                   >  2:3240133/1‑101 (MQ=255)                                            ttGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGGCGCCCCGGGCCTGCCCGAGGCGAAATCTCACCCCTCCAGCCCGTCCCGAatcat                                                        >  2:115537/1‑101 (MQ=21)                                                   aaTACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGGCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGaa                                                 >  1:3563856/1‑101 (MQ=255)                                                          cGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGGGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCac                                          >  2:4712632/1‑100 (MQ=255)                                                          cGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCAt                                          >  1:4945669/1‑101 (MQ=255)                                                            gggggTGCGGGGGGCGGAGCCCCCCGCGGGCCGCCTCGGGGCCGCCCGTGGCGGAATTCCCCCCCTCGAGCCAGGCCAGAATCACTCCTGACAGCCCAtgc                                        >  2:321701/1‑99 (MQ=16)                                                             ggggTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCCGTCCAGAATCATCCCTGAAAGCCCATCcg                                       >  2:1520827/1‑101 (MQ=255)                                                              gggTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCcgc                                      >  1:2812681/1‑101 (MQ=255)                                                                gTGCGGGGGGCGGAGCCCCCCGCGGGGCGCCTCCGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCgg                                    >  2:2862975/1‑101 (MQ=255)                                                                   cGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCACTCCGCGGAaa                                 >  2:1526298/1‑101 (MQ=255)                                                                    ggggggCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAAc                                >  2:2998049/1‑101 (MQ=255)                                                                     gggggCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAAcc                               >  1:3942920/1‑101 (MQ=255)                                                                     gggggCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAAcc                               >  2:4098732/1‑101 (MQ=255)                                                                      ggggCGGAGCCCCCCGCGGGTCGCCCCCGGCCTGCCCGAGGCGAAATCTCACCCCCCGAGCCCGTCCAGAATCAACCCTGAAAGCCCCTCCGCGGCCAccc                              >  2:2440555/1‑100 (MQ=25)                                                                       gggCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTc                             >  1:617768/1‑101 (MQ=255)                                                                          cGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTg                          >  2:3974515/1‑101 (MQ=255)                                                                           ggAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTgg                         >  2:2867246/1‑101 (MQ=255)                                                                            gAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGa                        >  2:3480498/1‑101 (MQ=255)                                                                             aGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGAt                       >  2:843148/1‑101 (MQ=255)                                                                              gCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAAGATCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCCGCAGCCTCGGGGagc                      >  2:1108604/1‑99 (MQ=37)                                                                                    cgcgGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGc                >  2:1480103/1‑101 (MQ=255)                                                                                     gcgGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATTcc               >  2:212124/1‑101 (MQ=255)                                                                                      cgGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGccc              >  2:4516168/1‑101 (MQ=255)                                                                                       gggTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACACCGTGGATCAGACGCccg             >  1:4752/1‑101 (MQ=255)                                                                                         gTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCccgcc           >  1:1041676/1‑101 (MQ=255)                                                                                            gCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTc        >  1:4482391/1‑101 (MQ=255)                                                                                            gCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTc        >  1:108870/1‑101 (MQ=255)                                                                                             ccTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTCg       >  2:1704089/1‑101 (MQ=255)                                                                                             ccTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTCg       >  1:837859/1‑101 (MQ=255)                                                                                             ccTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTCg       >  1:2428622/1‑101 (MQ=255)                                                                                               tCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCccgcccgagac     >  2:1058340/1‑95 (MQ=255)                                                                                                 gggCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGTCAACCTCGTGGATCAGATGCCCGCCGTCGATcc   >  1:4365977/1‑101 (MQ=255)                                                                                                  ggCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTCGATccg  >  1:3706407/1‑101 (MQ=255)                                                                                                  ggCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTCGATccc  >  2:3771578/1‑100 (MQ=255)                                                                                                  |                                                                                                     TTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTCGATCCG  >  NC_014034/744710‑744907 Base quality scores:  ATCG  < 3 ≤  ATCG  < 12 ≤  ATCG  < 20 ≤  ATCG  < 31 ≤  ATCG  < 40 ≤  ATCG