New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 744791	27 (0.110)	27 (0.110)	2/198	29.6	0.43	intergenic (+176/+36)	idi2/bchO	isopentenyl‑diphosphate delta‑isomerase/magnesium‑chelatase BchO
	?	NC_014034	= 2330174	46 (0.190)					intergenic (+149/+163)	RCAP_rcc02161/mrcA	hypothetical protein/penicillin‑binding protein 1A
Rejected: Position hash score below cutoff.

CAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATC  >  NC_014034/744692‑744887                                                                                                    |                                                                                                 cAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGccccc                                                                                                 <  1:4547622/101‑1 (MQ=255)             aatgaCTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGGCGccc                                                                                     >  1:1181757/1‑100 (MQ=255)                   tttCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGGCGCCTCGGGcc                                                                               >  2:540863/1‑101 (MQ=255)                         tCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGGCGCCTCGGGCCCGcccc                                                                         >  2:3005217/1‑100 (MQ=255)                         tCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGGCGCCCCGGGCCTGcccc                                                                         >  1:4786631/1‑100 (MQ=255)                                cggTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGGCGCCCCGGGCCTGCCCCCGGCgga                                                                  >  1:3536043/1‑99 (MQ=18)                                      aGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGGCGCCCCGGGCCTGCCCGAGGCGAAATCTCa                                                            >  1:1976687/1‑101 (MQ=255)                                         cTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGCCGCCCCGGGGCTGCCCGCGGGGGAAACCCAccc                                                         >  1:4334138/1‑101 (MQ=14)                                                   ccTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCAACCCTCGAGCCAg                                               >  2:3240133/1‑101 (MQ=255)                                                              ttGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGGCGCCCCGGGCCTGCCCGAGGCGAAATCTCACCCCTCCAGCCCGTCCCGAatcat                                    >  2:115537/1‑101 (MQ=21)                                                                     aaTACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGGCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGaa                             >  1:3563856/1‑101 (MQ=255)                                                                            cGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGGGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCac                      >  2:4712632/1‑100 (MQ=255)                                                                            cGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCAt                      >  1:4945669/1‑101 (MQ=255)                                                                              gggggTGCGGGGGGCGGAGCCCCCCGCGGGCCGCCTCGGGGCCGCCCGTGGCGGAATTCCCCCCCTCGAGCCAGGCCAGAATCACTCCTGACAGCCCAtgc                    >  2:321701/1‑99 (MQ=16)                                                                               ggggTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCCGTCCAGAATCATCCCTGAAAGCCCATCcg                   >  2:1520827/1‑101 (MQ=255)                                                                                gggTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCcgc                  >  1:2812681/1‑101 (MQ=255)                                                                                  gTGCGGGGGGCGGAGCCCCCCGCGGGGCGCCTCCGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCgg                >  2:2862975/1‑101 (MQ=255)                                                                                     cGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCACTCCGCGGAaa             >  2:1526298/1‑101 (MQ=255)                                                                                      ggggggCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAAc            >  2:2998049/1‑101 (MQ=255)                                                                                       gggggCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAAcc           >  2:4098732/1‑101 (MQ=255)                                                                                       gggggCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAAcc           >  1:3942920/1‑101 (MQ=255)                                                                                        ggggCGGAGCCCCCCGCGGGTCGCCCCCGGCCTGCCCGAGGCGAAATCTCACCCCCCGAGCCCGTCCAGAATCAACCCTGAAAGCCCCTCCGCGGCCAccc          >  2:2440555/1‑100 (MQ=25)                                                                                         gggCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTc         >  1:617768/1‑101 (MQ=255)                                                                                            cGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTg      >  2:3974515/1‑101 (MQ=255)                                                                                             ggAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTgg     >  2:2867246/1‑101 (MQ=255)                                                                                              gAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGa    >  2:3480498/1‑101 (MQ=255)                                                                                               aGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGAt   >  2:843148/1‑101 (MQ=255)                                                                                                gCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAAGATCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCCGCAGCCTCGGGGagc  >  2:1108604/1‑99 (MQ=37)                                                                                                    |                                                                                                 CAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCGGGTCGCCTCGGGCCTGCCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATC  >  NC_014034/744692‑744887 Base quality scores:  ATCG  < 3 ≤  ATCG  < 10 ≤  ATCG  < 18 ≤  ATCG  < 29 ≤  ATCG  < 39 ≤  ATCG