New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1732870 =	27 (0.140)	30 (0.160)	15/154	16.7	0.47	intergenic (‑294/‑109)	RCAP_rcc01601/tgt	FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase
	?	NC_014034	= 2474937	42 (0.170)					intergenic (‑100/+26)	RCAP_rcc02301/engA	hypothetical protein/GTP‑binding protein EngA
Rejected: Position hash score below cutoff.

TCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTC.GGGGGGGCGGGGGGTGAAGCCCCC..C...GT...C...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCCAAAGG  >  NC_014034/1732788‑1732970                                                                                               |                                                                                                      ccAACAGGCAAGGGCCCCGCTTTTCCTAGGAAAAATACCCCTTTCTTTCTTTGG.GGGGGGGGGGGGGGGGAAGCCCCC..C...GCGGGT...CG.CCTCGGGCTTGccc                                                                                       <  2:4476187/100‑1 (MQ=12)  cAACGGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTC.GGGGGGGCGGGGGGTGAAGCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCg                                                                                      <  2:4201378/101‑1 (MQ=21)      aGGCAGGGGCCCCGCTGTTCCTAGGCAAAATACGCCCTTCTTTCTTTTC.GGGGGGGCGGGGGGTGAAGCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGc                                                                                  <  2:3335678/101‑1 (MQ=18)       ggcgggggCCCCGTTTTTCCTGGGCAAAACCCCCCTTTTTTTCTTTGG.GGGGGGGGGGGGGGTGAACCCCCC..C...GCGGGT...CG.CCTCGGGCTTGCCCGAGGCg                                                                                 <  1:1639593/96‑1 (MQ=2)          aggcacccgtcTTTTCCGAGGCAAAAAACGCCCTTCTTTCTTTGC.GGGGGGGGGGGGTGGAAATCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGaaa                                                                              <  2:1609115/91‑1 (MQ=9)           aGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTGTTC.GGGGGGGCGGGGGGGGAAGCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAg                                                                             <  1:2118920/101‑1 (MQ=18)            gggCCCCGCTTTTCCTAGCCAAAATCCGCCCTTCTTTCTTTTG.GGGGGGGCGGGGGGTGAAGCCCCC..C...GCGGGT...CG.CCTCGGGCTTGCCCGAGGCGAAAGc                                                                            <  2:389012/101‑1 (MQ=17)               ccccGTTTTCCTTGGGAAAAATCCGCCTTTTTTTCTTTCG.GGGGGGGGGGGGGGTGAGCCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTc                                                                         <  2:4907067/101‑1 (MQ=0)                  cgttttgcttAGGAAAAATCCGCCTTTTTTTTTTTGG.GGGGGGGGGGGGGGGGAACCCCCC..C...GC...GGGTCG.CCTCGGGCTTGCCCGAGGCGAAAGCTTcccc                                                                      <  1:3700412/92‑1 (MQ=2)                             ggCAAAATCCGCCTTTCTTTCTTTGG.GGGGGGGCGGGGGGGGAAGCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAAcc                                                           <  2:1946435/101‑1 (MQ=14)                                aaaaTACGCCCTTCTTTCTTTTC.GGGGGGGCGGGGGGTTAAGCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGCGGAAACCTTg                                                        >  1:403538/1‑101 (MQ=18)                                 aagtACGCCCTTCTTTCTTTTC.GGGGGGGCGGGGGGTGAAGCCTCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGc                                                       <  1:219711/98‑1 (MQ=18)                                 aaaTACGCCCTTCTTTCTTTTC.GGGGGGGCGGGGGGGGGAGCCCCC..CCCGGG...G...CGCCCCCGGGCTTGCCCGGGGCGAAGGGTCCCCCCCCCGAAAAcccct                                                        >  2:4911729/1‑98 (MQ=255)                                    tccGCCCTTTTTTGTTTGG.GGGGGGGCGGGGGGTGAAGCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTg                                                    <  1:2235457/99‑1 (MQ=14)                                      cccccTTTTTTTTTTTG.GGGGGGGGGGGGGGTAACCCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTgcg                                                  <  1:1294113/99‑1 (MQ=12)                                      cGCCTTTCTTTCTTTTC.GGGGGGGCGGGGGGTGAAGCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTgcg                                                  <  1:783118/101‑1 (MQ=18)                                      cGCCCTTTTTTCTTTTG.GGGGGGGCGGGGGGTGAAGCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTgcg                                                  <  2:4808478/101‑1 (MQ=18)                                            tttttctttCG.GGGGGGGGGGGGGGTGAACCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTc                                            <  2:2186733/99‑1 (MQ=17)                                              tttgcggtC.GGGGGGGAGGGGGGCGAAGCCNCCGGCG..GG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGc                                          <  1:2459183/94‑1 (MQ=17)                                                 ttttgC.GGGGGGGCGGGGGGTGACCCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCttt                                       <  2:1353154/100‑1 (MQ=18)                                                  ttttCGGGGGGGGCGGGGGGTAAAACCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCttt                                       <  1:806752/101‑1 (MQ=18)                                                   tttG.GGGGGGGGGGGGGGTGAAGCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTcc                                     <  1:744353/101‑1 (MQ=18)                                                   tttC.GGGGGGGGGGGGGGTGAAGCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTcc                                     <  1:2322561/101‑1 (MQ=21)                                                      tggggggggGGGGGGGTGCACCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCt                                   <  2:2424321/99‑1 (MQ=18)                                                        gggggggGGGGGGGTGAAGCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCttt                                 <  2:3314660/101‑1 (MQ=21)                                                        gggggggCGGGGGGTGAAGCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCttt                                 <  2:696480/101‑1 (MQ=21)                                                         ggggggGGGGGGGTGAAGCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTc                                <  2:384356/101‑1 (MQ=21)                                                          gggggCGGGGGGTGAACCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCg                               <  1:1676318/101‑1 (MQ=21)                                                              gCGGGGGGTGAAGCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGccc                           <  1:4199792/101‑1 (MQ=21)                                                                ggggggTGAAGCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGGGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCCGCCCgg                         >  1:1217163/1‑101 (MQ=18)                                                                ggggggTGAAGCCCCC..CGCGGG...G...CG.CCTCGGGCTTGCCCGAGGGGAAAGCTTCCCCCCCTGAAAACCTTGCCTGCGCGCGGCGCTTTCCCTTTTGGccccc                         >  1:4268330/1‑99 (MQ=18)                                                                 gggggTGAAGCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGGAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGGCGCCTTCCCTTTCGGCCCCgc                        >  2:2069423/1‑101 (MQ=18)                                                                 gggggTGAAGCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGgc                        >  1:1100806/1‑101 (MQ=21)                                                                                        cgcgggtcG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAAcgcgcg         >  1:30969/8‑101 (MQ=255)                                                                                         gcgggtcG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACgcgcgc        >  1:3007731/7‑101 (MQ=255)                                                                                          cgggtcG.CCTCAGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGcc       <  1:4864337/96‑1 (MQ=255)                                                                                           gggtcG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCCa      >  1:2281270/5‑101 (MQ=255)                                                                                           gggtcG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCCa      <  2:3186628/97‑1 (MQ=255)                                                                                           gggtcG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCCa      >  1:3827121/5‑101 (MQ=255)                                                                                           gggtcG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCCa      <  1:3280553/97‑1 (MQ=255)                                                                                           gggtcG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACCCGCGCCa      >  2:2274152/5‑101 (MQ=255)                                                                                            ggtcG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCCaa     <  1:4004572/98‑1 (MQ=255)                                                                                             gtcG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCCaaa    <  1:1825146/99‑1 (MQ=255)                                                                                             gtcG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCCaaa    >  2:1468923/3‑101 (MQ=255)                                                                                              tcG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCCAAAg   >  2:2804728/2‑101 (MQ=255)                                                                                               cG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCCAAAgg  >  2:2887525/1‑101 (MQ=255)                                                                                               cG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCCAAAgg  >  1:2452778/1‑101 (MQ=255)                                                                                               cG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCCAAAgg  >  2:2449578/1‑101 (MQ=255)                                                                                               cG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCCAAAgg  >  1:1893291/1‑101 (MQ=255)                                                                                               cG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCCAAAgg  <  2:1194265/101‑1 (MQ=255)                                                                                               cG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCCAAAgg  <  2:815699/101‑1 (MQ=255)                                                                                               |                                                                                                      TCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTC.GGGGGGGCGGGGGGTGAAGCCCCC..C...GT...C...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGCGCTGCTAAACGCGCGCCAAAGG  >  NC_014034/1732788‑1732970 Base quality scores:  ATCG  < 3 ≤  ATCG  < 8 ≤  ATCG  < 22 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG