New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 3214783	NA (NA)	105 (0.520)	69/164	3.0	1.00	intergenic (‑39/+19)	dctQ3/dctP3	TRAP C4‑dicarboxylate transport system permease subunit DctQ/TRAP C4‑dicarboxylate transport system permease subunit DctP
	?	NC_014034	3214784 =	1 (0.000)					intergenic (‑40/+18)	dctQ3/dctP3	TRAP C4‑dicarboxylate transport system permease subunit DctQ/TRAP C4‑dicarboxylate transport system permease subunit DctP
Rejected: Position hash score below cutoff.

GTCGCCGTCGCGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGCC..........GCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTCG  >  NC_014034/3214683‑3214841                                                                                                     |                                                                               gtcgccgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGaaagggaaaggg                                                                                >  2:3644377/1‑101 (MQ=255) gtcgccgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGGCGGGGAAGGgaagggaaaggg                                                                                >  1:3017539/1‑101 (MQ=255) gtcgccgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGACGGCCCCCGCTTAGGTCGTGGGAGGaaagggaaacgg                                                                                >  2:3374984/1‑101 (MQ=255)  tcgccgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGgg..........c                                                                     <  1:3017404/101‑1 (MQ=255)   cgccgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGgg..........cg                                                                    <  1:917527/101‑1 (MQ=255)   cgccgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGgg..........cg                                                                    >  2:2782170/1‑101 (MQ=255)   cgccgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGgg..........cg                                                                    >  2:3756474/1‑101 (MQ=255)    gccgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGgg..........cgg                                                                   <  1:2351555/101‑1 (MQ=255)    gccgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGgg..........cgg                                                                   >  1:937435/1‑101 (MQ=255)    gccgtcctGATGAGCGCGGCAATCAGCCCCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGgg..........cgg                                                                   <  2:4483282/101‑1 (MQ=255)      cgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCCTGGAAGGAAAGGGAAAGGg..........cggcg                                                                 >  2:2970051/1‑101 (MQ=255)       gtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........GGgcgc                                                                >  2:2399945/1‑101 (MQ=255)       gtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGgcgc                                                                >  1:2626931/1‑101 (MQ=255)       gtcgcGATGAGCGCCGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGgcgc                                                                <  2:4114049/101‑1 (MQ=255)        tcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGagcc                                                               <  1:3891883/101‑1 (MQ=255)         cgcgATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGcgcc..........g                                                    >  2:981178/1‑101 (MQ=255)         cgcgATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGcgcc..........g                                                    >  2:3446218/1‑101 (MQ=255)         cgcgATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGcgcc..........g                                                    >  1:968369/1‑101 (MQ=255)         cgcgATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGcgcc..........g                                                    >  2:2527735/1‑101 (MQ=255)           tgATGAGCGCGGCAATCAGCCCCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGcgcc..........gtc                                                  <  1:2910237/100‑3 (MQ=255)            gATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGggcc..........gtca                                                 >  2:2910024/1‑98 (MQ=255)            gATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGcc..........gtcc                                                 <  2:1920485/101‑1 (MQ=255)            gATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGcc..........gtcc                                                 <  2:1862244/101‑1 (MQ=255)            gATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGcc..........gtcc                                                 <  2:2874870/101‑1 (MQ=255)            gATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGcc..........gtcc                                                 <  2:4173278/101‑1 (MQ=255)            gATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGcc..........gtcc                                                 <  1:3755856/101‑1 (MQ=255)             aagAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGcc..........gtccg                                                >  2:1496258/3‑101 (MQ=255)             aTGAGGGCGCCAATCAGCCCCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGcc..........gtccg                                                <  2:2063117/101‑1 (MQ=255)             aTGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGcc..........gtccg                                                >  1:2351580/1‑101 (MQ=255)             aTGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGcc..........gtccg                                                <  1:4269174/101‑1 (MQ=255)              tGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGcc..........gtccgg                                               <  2:1230578/101‑2 (MQ=255)              tGAGCGCGGCAATCAGCACCTCGTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGcc..........gtccgg                                               <  1:4576686/101‑2 (MQ=255)               gAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGcc..........gtccggc                                              >  1:1902890/1‑99 (MQ=255)               gAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGcc..........gtccggc                                              >  2:4245261/1‑99 (MQ=255)               gAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGcc..........gtccggc                                              <  2:734447/101‑3 (MQ=255)               gAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGcc..........gtccggc                                              <  1:3994664/101‑3 (MQ=255)                aGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........GGGCGcc..........gtccggcc                                             >  1:2706266/1‑98 (MQ=255)                  cgcgGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGcc..........gtccggcgcc                                           <  1:2075188/101‑6 (MQ=255)                  cgcgGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGcc..........gtccggcgcc                                           <  2:3110074/101‑6 (MQ=255)                  cgcgGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGcc..........gtccggcgcc                                           <  2:2628321/101‑6 (MQ=255)                  cgcgGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGcc..........gtccggcgcc                                           <  1:4693784/101‑6 (MQ=255)                  cgcgGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGcc..........ggccggcgcc                                           >  1:4817398/1‑96 (MQ=255)                   gcgGCAATCAGCCCCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGcc..........gtccggcgccg                                          <  2:4213547/101‑7 (MQ=255)                   gcgGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGGGcc..........gtccggcgccc                                          >  2:3173918/1‑95 (MQ=255)                    cgGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGcc..........gtccggcgccgc                                         >  2:1185227/1‑94 (MQ=255)                    cgGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGACGTGGAAGGAAAGGGAAAGGG..........GGGAGac..........gtccggcgccgc                                         >  2:2692723/1‑94 (MQ=255)                      gCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGcc..........gtccggcgccgccc                                       >  1:2224238/1‑92 (MQ=255)                      gCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGcc..........gtccggcgccgccc                                       <  1:3503875/101‑10 (MQ=255)                      gCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGcc..........gtccggcgccgccc                                       <  1:2904766/101‑10 (MQ=255)                      gCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGcc..........gtccggcgccgccc                                       <  1:573178/101‑10 (MQ=255)                       cAATCAGCACCTCTTCGGCCCGGTCGAGGATGCTCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGcc..........gtccggcgccgcccg                                      <  1:4324324/101‑11 (MQ=255)                       cAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGcc..........gtccggcgccgcccg                                      >  2:1237620/1‑91 (MQ=255)                                                    aTGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCC..........GCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGa                   >  1:538671/1‑101 (MQ=255)                                                         cagcaTGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCC..........GCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGGcggcg              >  2:1066504/1‑101 (MQ=255)                                                          agcaTGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCC..........GCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGAcggcgg             >  1:4034047/1‑101 (MQ=255)                                                          agcaTGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGCCGTCCGGCGCAGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGAccgcgg             >  1:1164736/1‑101 (MQ=255)                                                           gcaTGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCC..........GCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACggcggc            >  1:3579014/1‑101 (MQ=255)                                                            caTGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCC..........GCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGAcggnnngn           >  1:3583035/1‑96 (MQ=255)                                                            caTGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCC..........GCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGgcggcg           >  2:4249343/1‑101 (MQ=255)                                                            caTGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCC..........GCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGgcggcg           >  1:2935588/1‑101 (MQ=255)                                                              tGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCC..........GCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGAt         >  2:1330855/1‑101 (MQ=255)                                                                  ggcCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCC..........GCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGGTGGtt     >  2:982609/1‑101 (MQ=255)                                                                  ggcCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCC..........GCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGtt     >  2:3326722/1‑101 (MQ=255)                                                                  ggcCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCC..........GCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGtt     >  2:1107327/1‑101 (MQ=255)                                                                  ggcCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGCCGTCCGGCGCAGCCCGCCGGTCTTATTCCGCCGTCGCGGACTTGACGGCGGCGGTgggt     >  1:2754679/1‑99 (MQ=255)                                                                   gcCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCC..........GCCCGCAGGTCTTATTCCGCCGCCGCGGCCTTGACGGCGGCGATGGgtt    >  1:1060573/1‑101 (MQ=255)                                                                    cccccGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCC..........GCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTc   >  2:4635117/1‑101 (MQ=255)                                                                     ccccGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCC..........GCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGGTTCg  >  2:4272794/1‑101 (MQ=255)                                                                                                     |                                                                               GTCGCCGTCGCGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGCC..........GCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTCG  >  NC_014034/3214683‑3214841 Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG