New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_014034 | = 974307 | 7 (0.030) | 23 (0.100) | 18/188 | 18.0 | 0.26 | intergenic (+187/+72) | RCAP_rcc00884/RCAP_rcc00885 | hypothetical protein/hypothetical protein |
? | NC_014034 | 3276370 = | 122 (0.500) | intergenic (‑122/+127) | RCAP_rcc03082/RCAP_rcc03083 | lipoprotein/membrane bound YbgT‑like protein | |||||
Rejected: Position hash score below cutoff. |
GGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCG.TGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCC.C.GGG....GT..GTGCG.GAAGCCCCCGGCGGGTCGCCTCGGCGACAGCCGAGGCGAAATACCCCCGCCGCAACGGCCGGTTCTC > NC_014034/974208‑974380
|
ggACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGGCAAATATCC.C.ggg....g > 2:575230/1‑101 (MQ=255)
aCCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTTACCTTGCGACAAATATTC.C.ggg....ggg > 2:4505351/1‑99 (MQ=38)
aCCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCC.C.ggg....ggg > 1:3158369/1‑99 (MQ=255)
ccccccAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCC.C.ggg....ggtc < 1:2331296/101‑4 (MQ=255)
cccccAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTTACCCTTCGACCAAAATCC.C.cgg....gggcc > 1:2720924/1‑97 (MQ=25)
ccccAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCC.C.ggg....ggtccg < 2:745163/101‑6 (MQ=255)
ggcgggATCGGGCAGGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCGG.GGG....GTCCGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGAc < 2:1200225/101‑1 (MQ=2)
gcgggATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCC.CGGGG....GTCCGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGACa < 2:610303/101‑1 (MQ=14)
ggggccgctGCGCGGGGGTTTGTTTTCCCCTTGCGACAAATCCCC.G.GGGGGCCGG..GGGGG.GGAGCCCCCGGCGGGTCGCCTCGGCGACAGCCGAGGCGaaa < 1:3726384/93‑1 (MQ=0)
tGTTTTCACCTTGCGACAAATATCC.CGGGG....GTCCGGGGGCGGAGCCCCCGGCGGGGCGGCGCGGGGGGAGCCGAGGCGGAAAAACACCGCCGCacccggcc > 1:1444707/1‑94 (MQ=2)
tttCACCTTGCGACAAATATCC.CGGGG....GTCCGGGGGCGGAGCCCCCGGCGGGGGGCCCCGGCGGCCGCCGCGGCGGAAAACACCCGCCCCACCCGCCgggt > 1:2736440/1‑99 (MQ=2)
tttCACCTTGCGACAAATATCC.CGGGG....GTCCGGGGGCGGAGCCCCCGGCGGGGCGGCCCGGCGGCCGCCGCGGGGGAAAAAACCCGCCGCCACCGCCgggg > 2:88855/1‑99 (MQ=2)
cACCTTGCGACAAATATCC.C.GGGT...GTCCGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGACAGCCGAGGCGAAATACCCCGGCCGCAACGGCCGGTtctc < 2:4788687/101‑1 (MQ=14)
|
GGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCG.TGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCC.C.GGG....GT..GTGCG.GAAGCCCCCGGCGGGTCGCCTCGGCGACAGCCGAGGCGAAATACCCCCGCCGCAACGGCCGGTTCTC > NC_014034/974208‑974380
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 15 ≤
ATCG
< 24 ≤
ATCG
< 33 ≤
ATCG
< 41 ≤
ATCG
|