New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1395899 =187 (1.140)64 (0.390) 7/134 19.8 0.35 intergenic (+711/‑220) RCAP_rcc01306/RCAP_rcc01307 Cas2 family CRISPR‑associated protein/hypothetical protein
?NC_014034 = 1434448 52 (0.210)intergenic (‑227/‑731) RCAP_rcc01334/RCAP_rcc01335 hypothetical protein/Fis family GAF modulated sigma54 specific transcriptional regulator
Rejected: Position hash score below cutoff.

Only 100 of 150 total aligned reads displayed.

GGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA  >  NC_014034/1434348‑1434510
                                                                                                      |                                                              
gggTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAacac                                                                >  1:4474838/1‑101 (MQ=255)
gggTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAacac                                                                <  1:3138857/101‑1 (MQ=255)
gggTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAacac                                                                >  1:2521952/1‑101 (MQ=255)
 ggTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGCAACACg                                                               >  1:3591416/1‑101 (MQ=255)
 ggTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACg                                                               <  2:931222/101‑1 (MQ=255)
 ggTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACg                                                               <  1:2599153/101‑1 (MQ=255)
   tCGCTCCCCCCGCGGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGa                                                             >  1:1780514/1‑101 (MQ=255)
    cGCTCCCCCCGCGGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGAt                                                            <  2:2133373/101‑1 (MQ=255)
    cGCTCCCCCCGCGGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGAt                                                            <  2:4006916/101‑1 (MQ=255)
    cGCTCCCCCCGCGGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGAt                                                            >  1:2472453/1‑101 (MQ=255)
     gCTCCCCCCGCGGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGAtt                                                           >  2:4286471/1‑101 (MQ=255)
     gCTCCCCCCGCGGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGAtt                                                           <  1:2570848/101‑1 (MQ=255)
      cTCCCCCCGCGGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTg                                                          <  2:3001684/101‑1 (MQ=255)
      cTCCCCCCGCGGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTg                                                          >  1:452126/1‑101 (MQ=255)
      cTCCCCCCGCGGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTg                                                          <  2:4399044/101‑1 (MQ=255)
       tCCCCCCGCGGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGc                                                         >  1:4077980/1‑101 (MQ=255)
       tCCCCCCGCGGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGc                                                         <  1:4907749/101‑1 (MQ=255)
       cccccccGCGGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGc                                                         <  2:2994236/100‑1 (MQ=255)
        ccccccGCGGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCa                                                        >  1:2143954/1‑101 (MQ=255)
        ccccccGCGGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCa                                                        >  1:2910751/1‑101 (MQ=255)
        ccccccGCGGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCa                                                        >  2:1343452/1‑101 (MQ=255)
         cccccGCGGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCAt                                                       <  1:4936365/101‑1 (MQ=255)
         cccccGCGGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCGACTGCAt                                                       >  2:2247476/1‑101 (MQ=255)
          ccccGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGC.ACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCggcaaggac                                                       <  2:382478/101‑8 (MQ=37)
           cccGCGGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATgg                                                     <  2:447673/101‑1 (MQ=255)
           cccGCGGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATgg                                                     <  2:2905596/101‑1 (MQ=255)
           cccGCGGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATgg                                                     <  1:2685070/101‑1 (MQ=255)
            ccGCGGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGgc                                                    <  2:461185/101‑1 (MQ=255)
            ccGCGGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGgc                                                    <  1:4986645/101‑1 (MQ=255)
               cgGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGcc                                                 >  1:1823413/1‑101 (MQ=255)
               cgGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGcc                                                 <  2:1005422/101‑1 (MQ=255)
               cgGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGcc                                                 >  1:1313439/1‑101 (MQ=255)
               cgGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGcc                                                 >  2:268748/1‑101 (MQ=255)
                gggggCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCg                                                <  2:2470361/101‑1 (MQ=255)
                gggggCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCg                                                >  1:4891461/1‑101 (MQ=255)
                gggggCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCg                                                >  2:170734/1‑101 (MQ=255)
                 ggggCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGa                                               >  1:4285813/1‑101 (MQ=255)
                 ggggCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGa                                               >  1:1469840/1‑101 (MQ=255)
                 ggggCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGa                                               <  2:2757067/101‑1 (MQ=255)
                  gggCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAg                                              >  2:3567996/1‑101 (MQ=255)
                    gCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAggg                                            >  1:947761/1‑101 (MQ=255)
                     cGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGa                                           >  2:1668981/1‑101 (MQ=255)
                     cGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGa                                           >  1:1702761/1‑101 (MQ=255)
                     cGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGa                                           <  2:4342333/101‑1 (MQ=255)
                     cGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGa                                           >  1:3654763/1‑101 (MQ=255)
                     cGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGa                                           >  1:631064/1‑101 (MQ=255)
                     cGTGGATCGAAACGTCTCCGCTCTGCTCCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGa                                           >  2:2089621/1‑101 (MQ=255)
                      gTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGAc                                          <  1:2723835/101‑1 (MQ=255)
                      gTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGAc                                          <  1:2074176/101‑1 (MQ=255)
                      gTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGAc                                          >  2:3380205/1‑101 (MQ=255)
                      gTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGAc                                          >  2:782725/1‑101 (MQ=255)
                      gTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGAc                                          <  2:2522581/101‑1 (MQ=255)
                      gTGGATCAAAACGGCTCCGCTCGGCGTCACGGCGGCGTCAACCTG..GTCGCGCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGAc                                          <  1:650963/101‑1 (MQ=18)
                       tGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACa                                         >  2:1026562/1‑101 (MQ=255)
                       tGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACa                                         <  2:298166/101‑1 (MQ=255)
                        ggATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAg                                        >  1:4015336/1‑101 (MQ=255)
                         gATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAgg                                       <  2:851408/101‑1 (MQ=255)
                         gATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAgg                                       >  2:4039383/1‑101 (MQ=255)
                         gATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAgg                                       <  1:3645674/101‑1 (MQ=255)
                          aTCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGc                                      <  1:2334826/101‑1 (MQ=255)
                           tCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCt                                     <  1:150337/101‑1 (MQ=255)
                            cGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCtt                                    >  2:36558/1‑101 (MQ=255)
                            cGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCtt                                    <  1:3199307/101‑1 (MQ=255)
                            cGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCtt                                    >  1:2343333/1‑101 (MQ=255)
                             gAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTGGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCttt                                   <  2:4390346/101‑1 (MQ=255)
                             gAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCttt                                   <  2:3654491/101‑1 (MQ=255)
                             gAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCttt                                   <  1:3214128/101‑1 (MQ=255)
                              aagcGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTg                                  <  2:4258027/98‑1 (MQ=255)
                              aaaCGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTg                                  <  2:4088261/101‑1 (MQ=255)
                                 cGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAg                               >  1:1340938/1‑101 (MQ=255)
                                  gTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGt                              >  2:723483/1‑101 (MQ=255)
                                   tctcCGCTCTGCTTCACGGCTGCGTCCACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTc                             <  1:4241038/101‑1 (MQ=255)
                                      ccGCTCTGCTCCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCt                          <  2:1182062/101‑1 (MQ=255)
                                        gCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTcc                        <  2:2337/101‑1 (MQ=255)
                                        gCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTcc                        <  1:3984888/101‑1 (MQ=255)
                                         ctctGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTccc                       <  1:103721/101‑1 (MQ=255)
                                           ctGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTccccc                     >  2:3430285/1‑101 (MQ=255)
                                            tGCTTCACGGCTGCTTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTcccccc                    <  1:3080412/101‑1 (MQ=255)
                                            tGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGATcccccc                    >  2:2704180/1‑101 (MQ=255)
                                             gCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCcg                   >  1:3381021/1‑101 (MQ=255)
                                             gCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCAGGGCGGCGAGGGACAGGCTTTGCAGTCGCTCCCCCcg                   >  2:2955467/1‑101 (MQ=255)
                                              cTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCcgc                  <  2:474073/101‑1 (MQ=255)
                                              cTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCcgc                  <  2:1664087/101‑1 (MQ=255)
                                                 cACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCggg               >  2:565020/1‑101 (MQ=255)
                                                    ggCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGc            >  1:2958788/1‑101 (MQ=40)
                                                      cTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCgg          >  2:3880951/1‑100 (MQ=39)
                                                      cTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGt          <  2:4642338/101‑1 (MQ=39)
                                                       tGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTTCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCggg         >  1:3327375/1‑99 (MQ=255)
                                                        gCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTgg        >  2:551959/1‑101 (MQ=37)
                                                        gCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTgg        <  2:1522486/101‑1 (MQ=37)
                                                         cGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGa       <  2:4285496/101‑1 (MQ=35)
                                                          gTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGAt      <  1:1022333/101‑1 (MQ=34)
                                                           tCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGATc     >  2:1419649/1‑101 (MQ=33)
                                                           tCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGATc     >  2:1949048/1‑101 (MQ=33)
                                                            cAACCTT..GTCGCTTCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGATCg    >  1:3674023/1‑101 (MQ=17)
                                                             aaCCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGa   >  1:3870278/1‑101 (MQ=31)
                                                             aaCCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGa   >  2:1062673/1‑101 (MQ=31)
                                                             aaCCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGa   <  2:3183437/101‑1 (MQ=31)
                                                             aaCCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCCCGGGGGCGGGGATCGa   >  1:1928303/1‑101 (MQ=9)
                                                              aCCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGaa  <  2:4891134/101‑1 (MQ=11)
                                                                                                      |                                                              
GGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA  >  NC_014034/1434348‑1434510

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG