New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_014034 | = 1397533 | 242 (1.470) | 46 (0.280) | 2/134 | 24.4 | 0.28 | coding (1415/1578 nt) | RCAP_rcc01307 | hypothetical protein |
? | NC_014034 | 1434547 = | 0 (0.000) | intergenic (‑326/‑632) | RCAP_rcc01334/RCAP_rcc01335 | hypothetical protein/Fis family GAF modulated sigma54 specific transcriptional regulator | |||||
Rejected: Position hash score below cutoff. |
CTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGCCCGCGGCGTTTGACCTGGTCGCGG..GCAGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAC > NC_014034/1434474‑1434647
|
ctcgatcgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGAt < 2:1016784/94‑1 (MQ=0)
gTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAaca < 2:3925431/101‑2 (MQ=2)
gTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAacac > 1:4845198/1‑101 (MQ=11)
gTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAacac < 2:1404810/101‑1 (MQ=11)
|
CTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCGCCCGCGGCGTTTGACCTGGTCGCGG..GCAGCTGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTTGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAC > NC_014034/1434474‑1434647
Base quality scores: 
ATCG
< 3 ≤
ATCG
< 21 ≤
ATCG
< 27 ≤
ATCG
< 33 ≤
ATCG
< 39 ≤
ATCG
|