New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1440692 =236 (0.990)2 (0.010) 2/194 20.2 0.01 coding (1426/2310 nt) acxB acetone carboxylase subunit alpha
?NC_014035 96397 = 70 (0.510)coding (480/930 nt) RCAP_rcp00113 AraC family transcriptional regulator
Rejected: Position hash score below cutoff.

TGCGGCCCCCTGCCCCGGCCCCTGCACCGGCTTGTCCCCCGGCCCCTGCCCCGGTTCGGTCCGGTCGAAAATCTCGCCCAGAAGCGCCGAGAGCAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCACCCGCACCTCTTCGGCGGCCATCTGCGCCAGCGCCCGCAGCCGGGGATTGTCGCCGATCATCTGCGG  >  NC_014035/96298‑96492
                                                                                                   |                                                                                               
tGCGGCCCCCTGCCCCGGCCCCTGCACCGGCTTGTCCCCCGGCCCCTGCCCCGGTTCGGTCCGGTCGAAAATCTCGCCCAGAAGCGCCGAGAGCAGGCCAt                                                                                                <  1:380516/101‑1 (MQ=255)
 gCGGCCCCCTGCCCCGGCCCCTGCACCGGCTTGTCCCCCGGCCCCTGCCCCGGTTCGGTCCGGTCGAAAATCTCGCCCAGAAGCGCCGAGAGCAGGCCATc                                                                                               <  1:1348001/101‑1 (MQ=255)
 gCGGCCCCCTGCCCCGGCCCCTGCACCGGCTTGTCCCCCGGCCCCTGCCCCGGTTCGGTCCGGTCGAAAATCTCGCCCAGAAGCGCCGAGAGCAGGCCATc                                                                                               <  2:340567/101‑1 (MQ=255)
     ccgcttGCCCCGGCCCCTGCACCGGCCTGGCCCCCGGCCCCTGCCCCGGTTCGGTCCGGTCGAAAATCTCGCCCAGAAGCGCCGAGAGCAGGCCATCGAGc                                                                                           <  2:2302563/96‑1 (MQ=255)
     cccccTGCCCCGGCCCCTGCACCGGCTTGTCCCCCGGCCCCTGCCCCGGTTCGGTCCGGTCGAAAATCTCGCCCAGAAGCGCCGAGAGCAGGCCATCGAGc                                                                                           <  1:3275705/101‑1 (MQ=255)
       cccTGCCCCGGCCCCTGCACCGGCTTGTCCCCCGGCCCCTGCCCCGGTTCGGTCCGGTCGAAAATCTCGCCCAGAAGCGCCGAGAGCAGGCCATCGAGCAc                                                                                         <  1:3648475/101‑1 (MQ=255)
         cTGCCCCGGCCCCTGCACCGGCTTGTCCCCCGGCCCCTGCCCCGGTTCGGTCCGGTCGAAAATCTCGCCCAGAAGCGCCGAGAGCAGGCCATCGAGCACCa                                                                                       <  2:691888/101‑1 (MQ=255)
          tGCCCCGGCCCCTGCACCGGCTTGTCCCCCGGCCCCTGCCCCGGTTCGGTCCGGTCGAAAATCTCGCCCAGAAGCGCCGAGAGCAGGCCATCGAGCACCAt                                                                                      <  1:4183347/101‑1 (MQ=255)
          tGCCCCGGCCCCTGCACCGGCTTGTCCCCCGGCCCCTGCCCCGGTTCGGTCCGGTCGAAAATCTCGCCCAGAAGCGCCGAGAGCAGGCCATCGAGCACCAt                                                                                      >  1:1100928/1‑101 (MQ=255)
           gCCCCGGCCCCTGCACCGGCTTGTCCCCCGGCCCCTGCCCCGGTTCGGTCCGGTCGAAAATCTCGCCCAGAAGCGCCGAGAGCAGGCCATCGAGCACCAtc                                                                                     >  1:4881938/1‑101 (MQ=255)
             cccGGCCCCTGCACCGGCTTGTCCCCCGGCCCCTGCCCCGGTTCGGTCCGGTCGAAAATCTCGCCCAGAAGCGCCGAGAGCAGGCCATCGAGCACCAtctc                                                                                   <  2:2381586/101‑1 (MQ=255)
             cccGGCCCCTGCACCGGCTTGTCCCCCGGCCCCTGCCCCGGTTCGGTCCGGTCGAAAATCTCGCCCAGAAGCGCCGAGAGCAGGCCATCGAGCACCAtctc                                                                                   <  1:3532279/101‑1 (MQ=255)
                ggCCCCTGCACCGGCTTGTCCCCCGGCCCCTGCCCCGGTTCGGTCCGGTCGAAAATCTCGCCCAGAAGCGCCGAGAGCAGGCCATCGAGCACCATCTcgcc                                                                                >  2:4633661/1‑101 (MQ=255)
                 gCCCCTGCACCGGCTTGTCCCCCGGCCCCTGCCCCGGGTCGGTCCGGTCGAAAATCTCGCCCAGAAGCGCCGAGAGCAGGCCATCGAGCACCATCTcgccc                                                                               >  2:77197/1‑100 (MQ=255)
                  ccccTGCACCGGCTTGTCCCCCGGCCCCTGCCCCGGTTCGGTCCGGTCGAAAATCTCGCCCAGAAGCGCCGAGAGCAGGCCATCGAGCACCATCTcgccgc                                                                              >  1:2426709/1‑101 (MQ=255)
                   cccTGCACCGGCTTGTCCCCCGGCCCCTGCCCCGGTTCGGTCCGGTCGAAAATCTCGCCCAGAAGCGCCGAGAGCAGGCCATCGAGCACCATCTCGCcgcg                                                                             <  2:564301/101‑1 (MQ=255)
                     cTGCACCGGCTTGTCCCCCGGCCCCTGCCCCGGTTCGGTCCGGTCGAAAATCTCGCCCAGAAGCGCCGAGAGCAGGCCATCGAGCACCATCTCGCcgcggc                                                                           >  2:2824631/1‑101 (MQ=255)
                     cTGCACCGGCTTGTCCCCCGGCCCCTGCCCCGGTTCGGTCCGGTCGAAAATCTCGCCCAGAAGCGCCGAGAGCAGGCCATCGAGCACCATCTCGCcccggc                                                                           >  2:3858233/1‑101 (MQ=255)
                      tGCACCGGCTTGTCCCCCGGGCCCTGCCCCGGGTCGGGCCGGACGCAAATCTCGCCCAGAGGCTCCGGGAGCAGGCCATCGAGCACCATCTCGCcccggcc                                                                          >  2:85160/1‑100 (MQ=255)
                       gCACCGGCTTGTCCCCCGGCCCCTGCCCCGGTTCGGTCCGGTCGAAAATCTCGCCCAGAAGCGCCGAGAGCAGGCCATCGAGCACCCTCTCGCcgcggcgc                                                                         >  1:4190110/1‑101 (MQ=255)
                           cGGCTTGTCCCCCTGCCCCTGCCCCGGTTCGGTCCGGTCGAAAATCTCGCCCAGAAGCGCCGAGAGCAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCa                                                                     >  1:4029171/1‑101 (MQ=255)
                              cTTGTCCCCCGGCCCCTGCCCCGGTTCGGTCCGGTCGAAAATCTCGCCCAGAAGCGCCGAGAGCAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCAccc                                                                  >  1:1659745/1‑101 (MQ=255)
                               ttGTCCCCCGGCCCCTGCCCCGGTTCGGTCCGGTCGAAAATCTCGCCCAGAAGCGCCGAGAGCAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCACCCg                                                                 >  2:1246501/1‑101 (MQ=255)
                                tGTCCCCCGGCCCCTGCCCCGGTTCGGTCCGGTCGAAAATCTCGCCCAGAAGCGCCGAGAGCAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCACCCGc                                                                <  2:4753618/101‑1 (MQ=255)
                                 gccccccGCCCCCTGCCCCGGTTCGGGCCGGTCGAAAAGCTCGCCCAGAAGCGCCGAGGGCAGGCCATCGAGCCCCCTCGCGCCGCGGCGCGGCACCCGCa                                                               <  2:3582164/99‑1 (MQ=255)
                                 gTCCCCCGGCCCCTGCCCCGGTTCGGTCCGGTCGAAAATCTCGCCCAGAAGCGCCGAGAGCAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCACCCGCa                                                               >  1:3128328/1‑101 (MQ=255)
                                  tCCCCCGGCCCCTGCCCCGGTTCGGTCCGGTCGAAAATCTCGCCCAGAAGCGCCGAGAGCAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCACCCGCAc                                                              >  2:2414640/1‑101 (MQ=255)
                                   cccccGGCCCCTGCCCCGGTTCGGTCCGGTCGAAAATCTCGCCCAGAAGCGCCGAGAGCAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCACCCGCAcc                                                             >  1:1945833/1‑101 (MQ=255)
                                    ccccGGCCCCTGCCCCGGTTCGGTCCGGTCGAAAATCTCGCCCAGAAGCGCCGAGAGCAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCACCCGCACct                                                            <  1:2720761/101‑1 (MQ=255)
                                      ccGGCCCCTGCCCCGGTTCGGTCCGGTCGAAATTCTCGCCCAGAAGCGCCGAGAGCAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCACCCGCACctct                                                          <  2:3779657/101‑1 (MQ=255)
                                       cGGCCCCTGCCCCGGTTCGGTCCGGTCGAAAATCTCGCCCAGAAGCGCCGAGAGCAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCACCCGCACCTCtt                                                         <  2:3989451/101‑1 (MQ=255)
                                        ggCCCCTGCCCCGGTTCGGTCCGGTCGAAAATCTCGCCCAGAAGCGCCGAGAGCAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCACCCGCACCTCTTc                                                        <  1:463638/101‑1 (MQ=255)
                                        ggCCCCTGCCCCGGTTCGGTCCGGTCGAAAATCTCGCCCAGAAGCGCCGAGAGCAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCACCCGCACCTCTTc                                                        <  2:1160041/101‑1 (MQ=255)
                                         gCCCCTGCCCCGGTTCGGTCCGGTCGAAAATCTCGCCCAGAAGCGCCGAGAGCAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCACCCGCACCTCTTcg                                                       >  1:45482/1‑101 (MQ=255)
                                         gCCCCTGCCCCGGTTCGGTCCGGTCGAAAATCTCGCCCAGAAGCGCCGAGAGCAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCACCCGCACCTCTTcg                                                       >  1:3774287/1‑101 (MQ=255)
                                          ccccTGCCCCGGTTCGGTCCGGTCGAAAATCTCGCCCAGAAGCGCCGAGAGCAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCACCCGCACCTCTTcgg                                                      >  2:4338467/1‑101 (MQ=255)
                                          ccccTGCCCCGGTTCGGTCCGGTCGAAAATCTCGCCCAGAAGCGCCGAGAGCAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCACCCGCACCTCTTcgg                                                      >  2:2508710/1‑101 (MQ=255)
                                             cTGCCCCGGTTCGGTCCGGTCGAAAATCTCGCCCAGAAGCGCCGAGAGCAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCACCCGCACCTCTTcggcgg                                                   >  2:3386847/1‑101 (MQ=255)
                                                   cGGTTCGGTCCGGTCGAAAATCTCGCCCAGAAGCGCCGAGAGCAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCACCCGCACCTCTTCGGCGGCCATCt                                             <  2:45472/101‑1 (MQ=255)
                                                    ggTTCGGTCCGGTCGAAAATCTCGCCCAGAAGCGCCGAGAGCAGGCCATCGAGCACCATCTCGCCGCGGCGCGCCCCCCGCACCTCTCCGGCGGCCCTCTg                                            >  1:1384837/1‑101 (MQ=255)
                                                     gTTCGGTCCGGTCGAAAATCTCGCCCAGAAGCGCCGAGAGCAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCACCCGCACCTCTTCGGCGGCCATCTgg                                           >  1:629170/1‑100 (MQ=255)
                                                     gTTCGGTCCGGTCGAAAATCTCGCCCAGAAGCGCCGAGAGCAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCACCCGCACCTCTTCGGCGGCCATCTgc                                           <  1:3686772/101‑1 (MQ=255)
                                                       tCGGTCCGGTCGAAAATCTCGCCCAGAAGCGCCGAGAGCAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCACCCGCACCTCTTCGGCGGCCATCTgcgc                                         <  2:2837589/101‑1 (MQ=255)
                                                       tCGGTCCGGTCGAAAATCTCGCCCAGAAGCGCCGAGAGCAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCACCCGCACCTCTTCGGCGGCCATCTgcgc                                         >  1:274917/1‑101 (MQ=255)
                                                        cggtccggtcGAAAATCTCGCCCAGAAGCGCCGAGAGCAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCACCCGCACCTCTTCGGCGGCCATCTGCGcc                                        >  1:841642/1‑101 (MQ=255)
                                                         ggtccggtcGAAAATCTCGCCCAGAAGCGCCGAGAGCAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCACCCGCACCTCTTCGGCGGCCATCTGCGCCa                                       >  2:315527/1‑101 (MQ=255)
                                                           tccggtcGAAAATCTCGCCCAGAAGCGCCGAGAGCAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCACCCGCACCTCTTCGGCGGCCATCTGCGCCAgc                                     >  1:518925/1‑101 (MQ=255)
                                                            ccggtcGAAAATCTCGCCCAGAAGCGCCGAGAGCAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCACCCGCACCTCTTCGGCGGCCATCTGCGCCAgcg                                    >  1:3988535/1‑101 (MQ=255)
                                                            ccggtcGAAAATCTCGCCCAGAAGCGCCGAGAGCAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCACCCGCACCTCTTCGGCGGCCATCTGCGCCAgcg                                    >  1:1486489/1‑101 (MQ=255)
                                                                tcGAAAATCTCGCCCAGAAGCGCCGAGAGCAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCACCCGCACCTCTTCGGCGGCCATCTGCGCCAGCGCCCg                                <  2:4860974/101‑1 (MQ=255)
                                                                  gAAAATCTCGCCCAGAAGCGCCGAGAGCAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCACCCGCACCTCTTCGGCGGCCATCTGCGCCAGCGCCCGCa                              >  2:4218848/1‑101 (MQ=255)
                                                                   aaaaTCTCGCCCAGAAGCGCCGAGAGCAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCACCCGCACCTCTTCGGCGGCCATCTGCGCCAGCGCCCGCAg                             >  1:3192812/1‑101 (MQ=255)
                                                                   aaaaTCTCGCCCAGAAGCGCCGAGAGCAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCACCCGCACCTCTTCGGCGGCCATCTGCGCCAGCGCCCGCAg                             >  2:449668/1‑101 (MQ=255)
                                                                       tctcGCCCAGAAGCGCCGAGAGCAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCACCCGCACCTCTTCGGCGGCCATCTGCGGCAGCGCCCGCAGCCgg                         >  2:1277815/1‑101 (MQ=255)
                                                                          cGCCCAGAAGCGCCGAGAGCAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCACCCGCACCTCTTCGGCGGCCATCTGCGCCAGCGCCCGCAGCCGGGGa                      >  1:1615092/1‑101 (MQ=255)
                                                                           gCCCAGAAGCGCCGAGAGCAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCACCCGCACCTCTTCGGCGGCCATCTGCGCCAGCGCCCGCAGCCGGGGAt                     <  1:967213/101‑1 (MQ=255)
                                                                           gCCCAGAAGCGCCGAGAGCAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCACCCGCACCTCTTCGGCGGCCATCTGCGCCAGCGCCCGCAGCCGGGGAt                     >  1:3812207/1‑101 (MQ=255)
                                                                            cccAGAAGCGCCGAGAGCAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCACCCGCACCTCTTCGGCGGCCATCTGCGCCAGCGCCCGCAGCCGGGGAtt                    >  1:806042/1‑101 (MQ=255)
                                                                              cAGAAGCGCCGAGAGCAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCACCCGCACCTCTTCGGCGGCCATCTGCGCCAGCGCCCGCAGCCGGGGATTGt                  <  1:2933047/101‑1 (MQ=255)
                                                                              cAGAAGCGCCGAGAGCAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCACCCGCACCTCTTCGGCGGCCATCTGCGCCAGCGCCCGCAGCCGGGGATTGt                  >  2:1930478/1‑101 (MQ=255)
                                                                               aGAAGCGCCGAGAGCAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCACCCGCACCTCTTCGGCGGCCATCTGCGCCAGCGCCCGCAGCCGGGGATTGTc                 <  1:2334296/101‑1 (MQ=255)
                                                                               aGAAGCGCCGAGAGCAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCACCCGCACCTCTTCGGCGGCCATCTGCGCCAGCGCCCGCAGCCGGGGATTGTc                 >  2:1358557/1‑101 (MQ=255)
                                                                               aGAAGCGCCGAGAGCAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCACCCGCACCTCTTCGGCGGCCATCTGCGCCAGCGCCCGCAGCCGGGGATTGTc                 <  2:3192561/101‑1 (MQ=255)
                                                                                  aGCGCCGAGAGCAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCACCCGCACCTCTTCGGCGGCCACCTGCGCCAGCGCCCGCAGCCGGGGATTGTCGcc              >  1:4310597/1‑101 (MQ=255)
                                                                                   gcgcCGAGAGCAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCACCCGCACCTCTTCGGCGGCCATCTGCGCCAGCGCCCGCAGCCGGGGATTGTCGCCg             <  2:4877344/101‑1 (MQ=255)
                                                                                       cGAGAGCAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCACCCGCACCTCTTCGGCGGCCATCTGCGCCAGCGCCCGCAGCCGGGGATTGTCGCCGatca         >  1:3031636/1‑101 (MQ=255)
                                                                                        gagaGCAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCACCCGCACCTCTTCGGCGGCCATCTGCGCCAGCGCCCGCAGCCGGGGATTGTCGCCGatcat        >  2:2793926/1‑101 (MQ=255)
                                                                                          gagCAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCACCCGCACCTCTTCGGCGGCCATCTGCGCCAGCGCCCGCAGCCGGGGATTGTCGCCGATCATCt      >  2:4759997/1‑101 (MQ=255)
                                                                                          gagCAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCACCCGCACCTCTTCGGCGGCCATCTGCGCCAGCGCCCGCAGCCGGGGATTGTCGCCGATCATCt      <  2:3988233/101‑1 (MQ=255)
                                                                                          gagCAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCACCCGCACCTCTTCGGCGGCCATCTGCGCCAGCGCCCGCAGCCGGGGATTGTCGCCGATCATCt      <  2:2738699/101‑1 (MQ=255)
                                                                                            gCAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCACCCGCACCTCTTCGGCGGCCATCTGCGCCAGCGCCCGCAGCCGGGGATTGTCGCCGATCATCTGc    <  2:4291853/101‑1 (MQ=255)
                                                                                             cAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCACCCGCACCTCTTCGGCGGCCATCTGCGCCAGCGCCCGCAGCCGGGGATTGTCGCCGATCATCTGCg   <  1:315580/101‑1 (MQ=255)
                                                                                              aGGCCATCGAGCACCATCTCGCCGCGGCGCGGCACCCGCACCTCTTCGGCGGCCATCTGCGCCAGCGCCCGCAGCCGGGGATTGTCGCCGATCATCTGAgg  >  2:3529459/1‑101 (MQ=255)
                                                                                                   |                                                                                               
TGCGGCCCCCTGCCCCGGCCCCTGCACCGGCTTGTCCCCCGGCCCCTGCCCCGGTTCGGTCCGGTCGAAAATCTCGCCCAGAAGCGCCGAGAGCAGGCCATCGAGCACCATCTCGCCGCGGCGCGGCACCCGCACCTCTTCGGCGGCCATCTGCGCCAGCGCCCGCAGCCGGGGATTGTCGCCGATCATCTGCGG  >  NC_014035/96298‑96492

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG