New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1640006 =75 (0.330)74 (0.330) 12/184 20.8 0.55 intergenic (+86/‑59) mccB/mccA methylcrotonoyl‑CoA carboxylase subunit beta/methylcrotonoyl‑CoA carboxylase subunit alpha
?NC_014034 2070642 = 48 (0.200)intergenic (+57/+115) dcd/guaB deoxycytidine triphosphate deaminase/inosine‑5'‑monophosphate dehydrogenase
Rejected: Position hash score below cutoff.

CCAGGGGCTGAAGCTCGCCAAGCATTTCCGCGCGGGGT.GAGGGGCGCGCGGATGGATTTCG.CCGCGGCTTT.GCC.TGCGGCGACCCGCC..GGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGATT  >  NC_014034/2070546‑2070742
                                                                                                      |                                                                                                    
cggggggGTGAACCCCGCCAAGCTTTCCGGGGCGGGGG.GAGGGGCGCGCGGATGGTTTCCG.CCGCGGCTTT.GCC.GGCGGCGCCCCGCCG.GGGGGCGCTGcc                                                                                                   <  2:360295/98‑1 (MQ=255)
   ggggCTGAAGCCCGCCAAGCTTTCCCGGGGGGGGG.GGGGGGCGCGGGGATGGTTTCCC.CCGGGGCTTT.CCC.GGGGGCGCCCCGCCG.GGGGGCGCTGccccc                                                                                                <  2:3808826/101‑1 (MQ=255)
    gggCCGAAGCCCGCCAAGCTTTCCCGCGGGGGGG.GGGGGGCGCGGGGATGGTTTTCG.CGGCGGCTTT.GCC.GGCGGCCCCCCGCCG.GGGGGCGCTGcccccc                                                                                               <  2:699122/101‑1 (MQ=255)
    ggacagAAGCTCGCCACGTGTTCCCGCGGGGGGT.GGGGGGCGCGGGGTTGGTTTCCC.CGGCGGTTTT.GCC.GGGGGCGCCCCGCCG.GGGGGCGCTGcccccc                                                                                               <  2:2140073/96‑1 (MQ=255)
      gCTGAAGCTCGCCAAGCATTTCCGCGCGGGGT.GAGGGGCGCGCGGATGGATTTCG.CCGCGGCTTT.GCC.TGCGGCGACCCGCCG.GGGGGGGGTGcccccccc                                                                                             >  2:645992/1‑99 (MQ=38)
      gCTGAAGCGCGCCACGCTTCTCGGGGGGGGGG.GGGGGGCGCGGGGATGGTTTCCG.CCGGGGCTTT.GCC.GGCGGCGCCCCGCCG.GGGGGCGCTGCCCCCCgg                                                                                             <  2:4918042/101‑1 (MQ=255)
          aggcccGCCAAGCATGGCCGCGGGGGGG.GGGGGGCGCGCGGAGGGTTTCCG.CCGCGGTTTT.GCC.GGCGGCGCCCCGCCG.GGGGGCGCTGCCCCCCGGAccc                                                                                         <  2:4532364/96‑1 (MQ=19)
          acgcccGCCAAGCTTTCCCGGGGGGGGG.GGGGGGCGCGCGTGTGGTTTCCC.CCGCGGCTTT.GCC.GGCGGCGCCCCGCCG.GGGGGCGCTGCCCCCCGGAccc                                                                                         <  1:2971012/96‑1 (MQ=16)
          aaGCCCGACAAGCCTGTCCGCGCGGGGG.GAGGGGCGCCAGGTGCGTTTTCG.CGTCTTCTGC.GCC.CGCGGCAACCCGCCG.GGGGGCGCTGCCCCCCGGAccc                                                                                         <  2:734722/101‑1 (MQ=9)
            gcccGCCAATCTTCTCCGCGGGGGGT.GGGGGGCGGGCGAATGGTTTCCG.CCGCGGCTTG.GCC.TGCGGCCCCCCGCCG.GGGGGCGCTGCCCCCCGGAccccc                                                                                       <  2:4081535/98‑1 (MQ=16)
             ccccccAAGC.TTTCCGGGGGGGGTGGGGGGGCGCGCGGTTGTTTTCCG.CCGCGGCTTT.GCT.GGCGGCCCCCCGCCG.GGGGGCGCTGCCCCCCGGAcccccc                                                                                      <  2:3313293/97‑1 (MQ=12)
             cTCGCCAAGCATTTCCGCGCGGGGT.GAGGGGCGCGCGGATGGATTTCG.CCGCGGCTTT.GCC.TGCGGCGACCCGCCCGGGGGGGGCGGccccccccgccccc                                                                                       >  2:573205/1‑93 (MQ=255)
                ggcactcATTCCCGGGGGGGGG.GGGGGGCGCGGGTATGGTTTTGG.TTCCTGTTCT.CCC.GGCGCCGCCCCGCCG.GGGGGCGCTGCCCCCCGGACCCCCCggg                                                                                   <  1:3386877/95‑1 (MQ=2)
                           ccggggggggG.GGGGGGCGGGGGGGTGTTTTCCG.CCGCGGCTTT.GCC.GGCGGCGCCCCGCCG.GGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGc                                                                        <  1:2426669/95‑1 (MQ=16)
                           ccggcgggggG.GGGGGGCGCGCGGAGGTGTTCCG.CGGCGTTTTC.GCC.GGCGGCCCCCCGCCG.GGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGc                                                                        <  1:726039/95‑1 (MQ=9)
                           ccGCGCGGGGT.GAGGGGCGCGCGGATGGATTTCG.CCGCGGCTTT.GCC.TGCGGAGACCCGCCG.GGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGc                                                                        <  1:2352999/101‑1 (MQ=255)
                            ggcgggGGGG.GGGGGGCGCGGGGATGGTTTTCG.CCGCGGCTTT.GCC.GGCGGCGCCCCGCCG.GGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCa                                                                       <  2:3867618/100‑1 (MQ=21)
                            cgcgggGGGG.GGGGGGGGCGGGGTTGGTTTCCC.CCTGGTCTTC.GCG.CGCGGCGCCCCGCCG.GGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCa                                                                       <  2:2851501/101‑1 (MQ=9)
                             cgggggggG.GGGGGGCGCGCGGTTGTTTTCCC.CCGCGGTTTT.CCC.GGCGGCCCCCCGCCG.GGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCaa                                                                      <  1:3916445/97‑1 (MQ=12)
                               ggggggG.GGGGGGGGGGGGGGTGGTTTCCG.CCGCGGTTTT.GCC.GGGGGCCCCCCGCCG.GGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGa                                                                    <  1:3344234/99‑1 (MQ=9)
                                gggggG.GGGGGGCGGGGGGTTGGTTTGCG.CCGGGGTTTG.GCG.GGCGGCCCCCCGCCG.GGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGAt                                                                   <  1:989950/100‑1 (MQ=9)
                                 ggggG.GGGGGGGGGGGGGGTGGTTTCCG.CGGGGGCTTG.CCG.TGCGGGGCCCCGCCG.GGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATg                                                                  <  1:3677775/101‑1 (MQ=9)
                                 ggggG.GGGGGGGGCGGGGATGTTTTCCG.CCGCGCCTGG.GCC.GGCGGCGCCCCGCCG.GGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATg                                                                  <  2:4781670/101‑1 (MQ=12)
                                 ggggG.GGGGGCCGCGGGGTGGGTTTCCG.CCGCGGTTTC.GCC.GGCGGCCCCCCGCCG.GGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATg                                                                  <  2:2671678/101‑1 (MQ=9)
                                   ggggggggggCGCGGGGATGGTTTCCG.CCGCGGTTTT.GCC.GGCGGCCCCCCGCCG.GGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGa                                                                 <  2:828876/95‑1 (MQ=18)
                                      gggggggCGCGGGGAGTGTTTCCC.CCGCTGTTTG.GCC.GGCGGCGCCCCGCCG.GGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAgg                                                              <  2:3958658/98‑1 (MQ=12)
                                        gggggCGGGGGGTTGGTTTCCG.CCGCGTCTTG.GCG.GGCGCCGCCCCGCCG.GGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAgggg                                                            <  1:2813533/100‑1 (MQ=12)
                                        gggggCGCGCGGATGGTTTGCC.CCGCGCCTTC.CCC.GGCGGCGCCCCGCCG.GGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAgggg                                                            <  1:3284550/100‑1 (MQ=18)
                                         ggggGGCGGGGGTGTTTTCCG.CCGCGTTTTT.GCC.GGCGGCGCCCCGCCG.GGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGa                                                           <  1:2251856/101‑1 (MQ=17)
                                          gggCGGGGGGGTGGTTTCCG..CGCGGTTTTCGCC.GGCGGCGCCCCGCCG.GGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGaa                                                          <  2:4870348/101‑1 (MQ=12)
                                          gggCGCGCGG.TTGTTTTCGCCCGGGGTTTG.GCC.GGCGGCGCCCCGCCG.GGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGaa                                                          <  1:4151116/101‑1 (MQ=12)
                                                  gggtggttcccg.ccgcCGCTTG.CCC.CCCCGCGCCCCGCCG.GGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGtt                                                  <  1:99823/91‑1 (MQ=17)
                                                  gggtgggtTCCG.GCGCGGCTTG.GCC.CGCGGCCCCCCGCCG.GGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGtt                                                  <  1:3782933/98‑1 (MQ=18)
                                                   gggtgttgccg.ccgcGTCTTG.CCC.GGCGCCCCCCCGCCG.GGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGttt                                                 <  2:1266499/92‑1 (MQ=17)
                                                   gatgttttgcg.ccgcGG.TTT.GCCGGGCGGCCCCCCGCCG.GGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGttt                                                 <  2:2159599/92‑1 (MQ=17)
                                                           tgcgcgggggCTTC.CCC.TGCGCCCCCCCGCCG.GGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTa                                          <  2:3155762/93‑1 (MQ=18)
                                                                     ggtttgcccggcggccCCCCGCCG.GGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGaaa                                  <  2:318500/91‑1 (MQ=21)
                                                                      ttt.GCC.TGCGGCGCCCCGCCG.GGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAg                               <  2:3400312/101‑1 (MQ=255)
                                                                                cgcccccccGCCG.GGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCTgggg                       <  1:4380848/95‑1 (MQ=25)
                                                                                 gcccccccGCCG.GGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGt                      <  2:1246829/96‑1 (MQ=255)
                                                                                  gccccccGCCG.GGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGtt                     <  1:573284/97‑1 (MQ=255)
                                                                                  gccccccGCCG.GGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGtt                     <  2:2412601/97‑1 (MQ=255)
                                                                                    cccccGCCG.GGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTc                   <  1:4399923/99‑1 (MQ=255)
                                                                                       ccgccg.GGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTcccc                <  1:5368/101‑1 (MQ=255)
                                                                                         cgccggggggCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTccccc               <  2:4546354/96‑1 (MQ=255)
                                                                                         cgccggggggCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTccccc               <  2:1206203/96‑1 (MQ=255)
                                                                                           ccggggggCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCgg             <  1:496180/98‑1 (MQ=255)
                                                                                            cggggggCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCGGc            <  2:1885628/99‑1 (MQ=255)
                                                                                              gggggCGGTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCGGccc          <  2:1359324/101‑1 (MQ=255)
                                                                                              gggggCGCTGCCCCCCGGGCCCCCCGGGATAGTTTTGGCAAGAAGAAGGGGGAGCGGGGTTTGCCGGTACACAGAAAAAAGGGCGGGGGTTCCCCCGGccc          >  2:2219897/1‑101 (MQ=21)
                                                                                               ggggCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCGGCCCt         <  2:4879082/101‑1 (MQ=255)
                                                                                               ggggCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCGGCCCt         <  1:971862/101‑1 (MQ=255)
                                                                                               ggggCCCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCGGCCCt         <  2:1391404/101‑1 (MQ=255)
                                                                                                gggCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCGGCCCtt        >  1:4895655/1‑101 (MQ=255)
                                                                                                gggCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCGGCCCtt        <  1:887389/101‑1 (MQ=255)
                                                                                                 ggCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCGGCCCTtg       <  1:1907377/101‑1 (MQ=255)
                                                                                                  gcgcTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCGGCCCTtgt      <  2:3655482/101‑1 (MQ=255)
                                                                                                   cgcTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCGGCCCTtgtg     >  2:1031875/1‑101 (MQ=255)
                                                                                                   cgcTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCGGCCCTtgtg     >  2:3486287/1‑101 (MQ=255)
                                                                                                   cgcTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCGGCCCTtgtg     >  2:752433/1‑101 (MQ=255)
                                                                                                    gcTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGa    >  1:649079/1‑101 (MQ=255)
                                                                                                    gcTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGa    >  1:3919856/1‑101 (MQ=255)
                                                                                                     cTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGAt   <  1:4642017/101‑1 (MQ=255)
                                                                                                      tGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGAtt  <  2:4895328/101‑1 (MQ=255)
                                                                                                      tGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGAtt  >  1:1896932/1‑101 (MQ=255)
                                                                                                      |                                                                                                    
CCAGGGGCTGAAGCTCGCCAAGCATTTCCGCGCGGGGT.GAGGGGCGCGCGGATGGATTTCG.CCGCGGCTTT.GCC.TGCGGCGACCCGCC..GGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAGAAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGATT  >  NC_014034/2070546‑2070742

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG