BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	2330179 =	45 (0.190)	27 (0.120)	11/190	21.8	0.25	intergenic (+154/+158)	RCAP_rcc02161/mrcA	hypothetical protein/penicillin‑binding protein 1A
*	?	NC_014034	3276378 =	119 (0.490)	27 (0.120)	11/190	21.8	0.25	intergenic (‑130/+119)	RCAP_rcc03082/RCAP_rcc03083	lipoprotein/membrane bound YbgT‑like protein
Rejected: Position hash score below cutoff.

Only 100 of 130 total aligned reads displayed.


TAGCAGCCTGCACGACGGGGGCAAGGGGCAATGCGGCGCAAGGCCCCCCGGGCAACC.GGCCCCCGTTTCTTCTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCGGGTCGCCGCGCGGCCGCGC.GGC.GAAACAAAGGACCG.ACC.G.GGCA.GCCCCCCGGTCGGCCAGTGAACCCGAAACGC.GAAGGGACG  >  NC_014034/3276278‑3276476


tAGCAGCCTGCACGACGGGGGCAAGGGGCAATGCGGCGCAAGGCCCCCCGGGCAACC.GGCCCCCGTTTCTTCTTGGCCC.AAATACGCC.GGGGGTCC.ggggg                                                                                                              >  1:2711185/1‑101 (MQ=255)


 agcagcCTGCACTACGGGGGCAAGGGGCAATGCGGCGCAAGGCCCCCCGGGCAACC.GGCCCCCGTTTCTTCTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGc                                                                                                             <  2:3035446/101‑1 (MQ=255)


 agcagcCTGCACGACGGGGGCAAGGGGCAATGCGGCGCAAGGCCCCCCGGGCAACC.GGCCCCCGTTTCTTCTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGc                                                                                                             >  1:143311/1‑101 (MQ=255)


 agcagcCTGCACGACGGGGGCAAGGGGCAATGCGGCGCAAGGCCCCCCGGGCAACC.GGCCCCCGTTTCTTCTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGc                                                                                                             <  2:3912730/101‑1 (MQ=255)


 agcagcCTGCACGACGGGGGCAAGGGGCAATGCGGCGCAAGGCCCCCCGGGCAACC.GGCCCCCGTTTATTCTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGc                                                                                                             >  1:4308912/1‑101 (MQ=255)


    agcCTGCACGACGGGGGCAAGGGGCAATGCGGCGCAAGGCCCCCCGGGCAACC.GGCCCCCGTTTCTTCTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.ggc                                                                                                         >  2:2999301/1‑100 (MQ=255)


    agcCTGCACGACGGGGGCAAGGGGCAATGCGGCGCAAGGCCCCCCGGGCAACC.GGCCCCCGTTTCTTCTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGa                                                                                                         <  1:3980160/101‑1 (MQ=255)


    agcCTGCACGACGGGGGCAAGGGGCAATGCGGCGCAAGGCCCCCCGGGCAACC.GGCCCCCGTTTCTTCTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGa                                                                                                         <  1:3151360/101‑1 (MQ=255)


       cTGCACGACGGGGGCAAGGGGCAATGCGGCGCAAGGCCCCCCGGGCAACC.GGCCCCCGTTTCTTCTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGcc                                                                                                      >  1:1304035/1‑101 (MQ=255)


       cTGCACGACGGGGGCAAGGGGCAATGCGGCGCAAGGCCCCCCGGGCAACC.GGCCCCCGTTTCTTCTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGcc                                                                                                      >  2:141806/1‑101 (MQ=255)


       cTGCACGACGGGGGCAAGGGGCAATGCGGCGCAAGGCCCCCCGGGCAACC.GGCCCCCGTTTCTTCTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGcc                                                                                                      <  1:2093162/101‑1 (MQ=255)


        tGCACGACGGGGGCAAGGGGCAATGCGGCGCAAGGCCCCCCGGGCAACC.GGCCCCCGTTTCTTCTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGccc                                                                                                     >  1:4774137/1‑101 (MQ=255)


        tGCACGACGGGGGCAAGGGGCAATGCGGCGCAAGGCCCCCCGGGCAACC.GGCCCCCGTTTCTTCTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGccc                                                                                                     >  1:531043/1‑101 (MQ=255)


        tGCACGACGGGGGCAAGGGGCAATGCGGCGCAAGGCCCCCCGGGCAACC.GGCCCCCGTTTCTTCTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGccc                                                                                                     <  2:2627001/101‑1 (MQ=255)


          cACGGCGGGGGCAGGGGGCAATGCGGCGCAAGGCCCCCCGGGCAACC.GGCCCCCGTTTCTTCTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGccccc                                                                                                   <  2:4003609/101‑1 (MQ=255)


           acgacgGGGGCAAGGGGCAATGCGGCGCAAGGCCCCCCGGGCAACC.GGCCCCCGTTTCTTCTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGCCCCc..g                                                                                                >  2:920942/1‑101 (MQ=255)


             gacgGGGGCAAGGGGCAATGCGGCGCAAGGCCCCCCGGGCAACC.GGCCCCCGTTTCTTCTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGCCCCc..ggc                                                                                              >  1:4419044/1‑101 (MQ=255)


                gggggCAAGGGGCAATGCGGCGCAAGGCCCCCCGGGCAACC.GGCCCCCGTTTCTTCTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCggg                                                                                           >  1:1202710/1‑101 (MQ=255)


                gggggCAAGGGGCAATGCGGCGCAAGGCCCCCCGGGCAACC.GGCCCCCGTTTCTTCTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCggg                                                                                           >  2:912480/1‑101 (MQ=255)


                gggggCAAGGGGCAATGCGGCGCAAGGCCCCCCGGGCAACC.GGCCCCCGTTTCTTCTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCggg                                                                                           >  1:3749382/1‑101 (MQ=255)


                gggggCAAGGGGCAATGCGGCGCAAGGCCCCCCGGGCAACC.GGCCCCCGTTTCTTCTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCggg                                                                                           >  1:2401887/1‑101 (MQ=255)


                gggggCAAGGGGCAATGCGGCGCAAGGCCCCCCGGGCAACC.GGCCCCCGTTTCTTCTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCggg                                                                                           >  2:3650777/1‑101 (MQ=255)


                  gggcaaggggcaaTGCGGCGCAAGGCCCCCCGGGCAACC.GGCCCCCGTTTCTTCTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCggggg                                                                                         >  1:3891948/1‑99 (MQ=255)


                   ggcaaggggcaaTGCGGCGCAAGGCCCCCCGGGCAACC.GGCCCCCGTTTCTTCTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCGGGGcg                                                                                        >  1:5023402/1‑101 (MQ=255)


                    gcacggggcaaTGCGGCGCAAGGCCCCCCGGGCAACC.GGCCCCCGTTTCTTCTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCggggggg                                                                                       >  1:3735076/1‑97 (MQ=255)


                     caaggggcaaTGCGGCGCAAGGCCCCCCGGGCAACC.GGCCCCCGTTTCTTCTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCgggggggc                                                                                      >  2:1783351/1‑96 (MQ=255)


                      aaggggcaaTGCGGCGCAAGGCCCCCCGGGCAACC.GGCCCCCGTTTCTTCTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCGGGGggccg                                                                                     >  2:5019614/1‑101 (MQ=255)


                         gggcaaGGGGGC.CAAGGCCCCCCCGGCCACC.CGCCCCCCTTTTTTTTTGGCCCAAAATCCGCG.GGGGGCCG.GGGGGG.GGACCCCCC..GGCGGGTCgccgcgc                                                                                  <  2:4138601/101‑1 (MQ=255)


                          ggcaaTGCGGCGCAAGGCCCCCCGGGCAACC.GGCCCCCGTTTCTTCTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCgggggggggccgg                                                                                 >  2:901222/1‑91 (MQ=255)


                           gaacggcggcgC.AGGCCCCCCGGGCCACC.GGCCCCCTTTTTCTTTTTGCCC.AAA.ACCCG.GGGGGGGC.GGGGGG.GGGGCCCCCCGGGCGGGTCgccgcgcgg                                                                                <  1:304618/96‑1 (MQ=255)


                            caaTGCGGCGCAAGGCCCCCCGGGCAACC.GGCCCCCGTTTCTTCTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCGGGGGgccccgcggc                                                                               >  2:4636576/1‑101 (MQ=255)


                            caaTGCGGCGCAAGGCCCCCCGGGCAACC.GGCCCCCGTTTCTTCTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCGGGGCgccccgcggc                                                                               >  1:709919/1‑101 (MQ=255)


                             aaTGCGGCGCAAGGCCCCCCGGGCAACC.GGCCCCCGTTTCTTCTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCGGGGGggcgcccggcc                                                                              >  1:4101993/1‑101 (MQ=21)


                                ggcgccccaGGCCCCCCCGGCCACCGGGCCCCCTTTGCTTCTTGGCCC.AAAGACGCG.GGGGGTCG.GGGGGG.GGACCCCCC..GGCGGGTCgccgcgcggccgc                                                                            <  1:2480729/93‑1 (MQ=9)


                                 cggcgCAAGGCCCCCCGGGCAACC.GGCCCCCGTTTCTTCTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCGGGGGgccgcgcggccgcgc                                                                          >  2:1060476/1‑101 (MQ=255)


                                 cggcgCAAGGCCCCCCGGGCAACC.GGCCCCCGTTTCTTCTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCGGGGCggcgggcggggggcc                                                                          >  1:3048599/1‑95 (MQ=18)


                                     gcAAGGCCCCCCGGGCAACC.GGCCCCCGTTTCTTCTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCGGGGCggcgcgcgggcgcgccggg                                                                      >  1:2981420/1‑97 (MQ=18)


                                      cAAGGCCCCCCGGGCAACC.GGCCCCCGTTTCTTCTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCGGGGCGCCGCGCGGGCGCGC.GGC.Ga                                                                   >  2:1728808/1‑101 (MQ=255)


                                       cccgCCCCCCGGACCCCC.GCCCCCCTTTTCTCGTGGGCCA.AAAGCCGGG.GGGGGGCG.GGGGGC.GGCCCCCCC..GGCGGGTCGCCGCGCGGCCGCGC.GGC.Gaa                                                                  <  2:1320675/98‑1 (MQ=2)


                                       aaGGCCCCCCGGGCAACC.GGCCCCCGTTTCTTCTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCGGGGGGGCGCCCGGGCGCgc.ggc.gga                                                                  >  2:564755/1‑99 (MQ=17)


                                       aaGGCCCCCCGGGCAACC.GGCCCCCGTTTCTTCTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCGGGGCGccgcgcgggcgcgc.ggggga                                                                   >  2:3370271/1‑97 (MQ=255)


                                       aaGGCCCCCCGGGCAACC.GGCCCCCGTTTCTTCTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCGGGGCGccgcgcggccgcgc.ggggga                                                                   >  2:2301041/1‑97 (MQ=255)


                                       aaGGCCCCCCGGGCAACC.GGCCCCCGTTTCTTCTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCGGGGCGCCGGGCCGGCGCcc.gcc.gga                                                                  >  2:3970114/1‑99 (MQ=17)


                                        gggCCCCCGGGCCACCC.GGCCCCGGTTTCTGCTGGGCGA.AAACCCGCG.GGGGGTCG.GGGGGG.GGGGCCCCC..GGCGGGTCGCCGCGCGGCCGCGC.GGC.Gaaa                                                                 <  1:3262919/100‑1 (MQ=9)


                                        aGGCCCCCCGGGCAACC.GGCCCCCGTTTCTTCTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCGGGGGGccgcgcggccgcgc.gggggaa                                                                  >  1:602480/1‑96 (MQ=255)


                                          ccccccgGGGCCCCC.CGCCCCCTTTTTCTTTGGGCCC.AAACGCGGG.GGGGGGGG.GGGGGG.GGGCCCCCCG.GGCGGGTCGCCGCGCGGCCGCGC.GGC.GAAAc                                                                <  1:4745071/100‑1 (MQ=2)


                                           ccccccGGGCCCCC.GGCCCCCGTTTTTTCTTGGCCC.AAAGCCGGC.GGGGGGCC.GGGGGG.GGGGCCCCCG.GGCGGGTCGCCGCGCGGCCGCGC.GGC.GAAACa                                                               <  1:1558632/101‑1 (MQ=11)


                                           ccccccGGGCAACC.GGCCCCCGTTTCTTCTGGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCGGGGCGCGCGGCGGCCGCGC.CGG.GGAACaa                                                              >  1:4492340/1‑101 (MQ=17)


                                             cccgGGCCACCC.GCCCCCCTTTTCTTCTGGCCCA.AAACCCGCG.GGGGGCCG.GGGGGC.GGACCCCCG..GGCGGGTCGCCGCGCGGCCGCGC.GGC.GAAACAAAg                                                            <  2:4773814/101‑1 (MQ=9)


                                             ccccGGGCCCGC.CGCCCCCGTTTTTTC.GGGCCC.AAAAGCGCG.GGGGGGGC.GGGGGG.GGGCCCCCCCGGGCGGGTCGCCGCGCGGCCGCGC.GGC.GAAACaaa                                                             <  1:359346/101‑1 (MQ=2)


                                              cccGGCCACCC.GCCCCCGGTTTCTCCTGGCCCC.AAACCGGCG.GGGGGGCG.GGGGGG.GGCCCCCCG..GGCGGGTCGCCGCGCGGCCGCGC.GGC.GAAACAAAgg                                                           <  1:2082856/101‑1 (MQ=9)


                                                cGGGCCCCC.GCCCCCGGTTTCTTCTGGCCCA.AAATCCGCG.GGGGGCCG.GGGGGC.GGACCCCCC..GGCGGGTCGCCGCGCGGCCGCGC.GGC.GAAACAAAGgac                                                         <  1:564834/101‑1 (MQ=14)


                                                          ggCCCCCGTTTCTTCTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCGGGGCGCCGCGCGGGCGCGC.GGG.GGGACAAAAGACCG.GCC.c.ggg                                             >  1:2763320/1‑100 (MQ=14)


                                                           gCCCCCGTTTCTTCTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCGGGGCGCCGCGCGGGCGCGC.GGC.GGAACAAAAGACCC.ACC.G.GGcg                                            >  1:2054420/1‑100 (MQ=17)


                                                           gCCCCCGTTTCTTCTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCGGGGAGCCACACGGCGCCGC.GGG.CCAAAAAACGAACG.CCC.g.ggac                                            >  1:3500198/1‑99 (MQ=2)


                                                            cccccGTTTTCTTTTGGCCC.AAAGTCGGC.GGGGGGTC.GGGGGCGGGCGCCCCC..GGCGGGTCGCCGCGCGGCCGCGC.GGC.GAAACAAAGGACCG.ACC.G.GGCa                                            <  2:4788516/101‑1 (MQ=17)


                                                             ccccGTTTCTTCTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCGGGGGGCCGCGCGGGCGCCG.GGG.GGGACAAAAGACCC.ACC.c.gggcgc                                          >  1:2624912/1‑97 (MQ=11)


                                                               ccctttCTTTCTGGCCC.CAAGGCGGCGGGGGGTCG.GGGGGC.GGGCCCCCG..GGCGGGTCGCCGCGCGGCCGCGC.GGC.GAAACAAAGGACCG.ACC.G.GGCA.Gcc                                        <  2:2065538/98‑1 (MQ=16)


                                                               ccGTTTCTTCTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCGGGGCGCCGCGCGGGCGCGC.GGC.GGAACAAAAGAGCC.ACC.G.GGCG.Gccc                                       >  1:1126329/1‑101 (MQ=17)


                                                                cGTTTCTTCTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCGGGGGGCCGCGCGGCCGCGC.GGC.GGAACAAAAGACCG.ACC.C.GGCA.Gcccc                                      >  2:577538/1‑101 (MQ=18)


                                                                cGTTTCTTCTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCGGGGCGCCGCGCGGCCGCGC.GGC.GGAAAAAAAGAACG.ACC.G.GGCA.Gcccc                                      >  2:477515/1‑101 (MQ=17)


                                                                 gTTTCTTCTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCGGGGGGCCGCGCGGCCCCGC.GGC.GGAACAAAAGACCG.AAC.G.GGCA.Ggcccc                                     >  2:4420898/1‑101 (MQ=17)


                                                                  tttCTTCTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCGGGGCGCCGCCCGGGCGCGC.GGG.GGAACAAAACAGCC.ACC.G.CGGC.Gcccccc                                    >  1:4470947/1‑101 (MQ=14)


                                                                  tttCTTCTTGGCCC.AAACACGCC.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCGGGTCGCCGCGCGGCCGCGC.GGC.GAAACAAAGGACCG.ACC.G.GGCA.Gcccccc                                    <  2:3225190/101‑1 (MQ=255)


                                                                   ttcttcTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCGGGTCGCCGCGCGGCCGCGC.GGC.GAAACAAAGGACCG.ACC.G.GGCA.GCCCCCCg                                   <  2:2401713/101‑1 (MQ=255)


                                                                   ttcttcTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCGGGGCGCCGCGCGGCCGCGC.GGG.GGAACAAAAGACCG.ACC.G.GGGA.Gccccccc                                   >  1:1438317/1‑100 (MQ=18)


                                                                    tcttctTGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCGGGGTGCCCCGCCGGCGCGC.GGC.GGAAAAAAAGACCC.ACC.GCGGGG.GCCCCCCg                                   >  1:1677843/1‑101 (MQ=9)


                                                                     cttcttGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCGGGGCGGCGCCCGGGCGCGG.GGG.GGAACAAAAGACCC.CCC.C.GGCC.Gccccccccc                                 >  1:3003230/1‑98 (MQ=9)


                                                                      ttcttGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCGGGGGGCCGCGCGGCCCCGC.GGC.GGAACAAAAGAACG.ACC.C.GGCA.Gcccccccgcc                                >  1:2513781/1‑97 (MQ=17)


                                                                       tcttGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCGGGGGGCCCCGCGGGCGCGC.GGCGGAAAAAAAGAACGA.ACC.G.GGCG.ACCCCCCggcg                                >  2:4588113/1‑99 (MQ=9)


                                                                         ctGGCCG.AAAATCGGC.GGGGGGCCGGGGGGC.GGACCCCCG..GGCGGGTCGCCGCGCGGCCGCGC.GGC.GAAACAAAGGACCG.ACC.G.GGCA.GCCCCCCGGTCgg                              <  1:810675/100‑1 (MQ=21)


                                                                           ggCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCGGGGCGGCGCGCGGCCGCGC.GGG.GGAACAAAAGAACG.ACC.G.GGGC.GCCCCCCCGCCGGccc                           >  1:4837154/1‑100 (MQ=17)


                                                                           ggCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCGGGGCGCCGCGCGGCCCCGC.GGC.GGAACAAAAGACCG.ACC.G.GGCA.Cccccccccgcggccc                           >  1:3734276/1‑92 (MQ=17)


                                                                            gcccaaaggccGCG.GGGGGCCG.GGGGGC.GGGCCCCCG..GGCGGGTCGCCGCGCGGCCGCGC.GGC.GAAACAAAGGACCG.ACC.G.GGCA.GCCCCCCGGTCGGCCa                           <  1:2130475/91‑1 (MQ=21)


                                                                            gcccaaaaTGCGCG.GGGGGACG.GGGGGC.GGACCCCCC..GGCGGGTCGCCGCGCGGCCGCGC.GGC.GAAACAAAGGACCG.ACC.G.GGCA.GCCCCCCGGTCGGCCa                           <  2:3734798/96‑1 (MQ=21)


                                                                                 aaaTACGCC.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCGGGGGGCCCCGCCGCCGCGC.GGC.GGAACAAAAGACCG.ACC.C.GGCC.GCCCCCCCGGCgggccgggaa                      >  2:2232435/1‑93 (MQ=12)


                                                                                  aaTACGCC.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCGGGGGGCCGCGCGGGCGCGC.GGG.GGAACAAAAGAACGAACC.G.GGAG.GCCCCCCGGCCGCccggggac                      >  2:4501998/1‑95 (MQ=9)


                                                                                  aaTACGCC.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCGGGGCGCCGCGCGGGCGCGC.GGC.GGAACAAAAGAACG.ACCGG.GGCG.GCCCCCCGG.CGGGCAGGGAAc                     >  2:3670262/1‑101 (MQ=17)


                                                                                  aaTACGCC.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCGGGGCGCCGCGCGGCCGCGC.GGG.GGAAAAAAAGACCC.ACC.G.GGCC.GCCCCCCCGGCGGcccggggac                     >  1:3503394/1‑94 (MQ=17)


                                                                                  aaTACGCC.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCGGGGCGCCCCGCGGGCCCGC.GGC.GCAACAAAAGACCG.ACC.G.GGCACGCCCCCCGG.CGGCCAGAGAAc                     >  2:3193679/1‑101 (MQ=18)


                                                                                     aCGCC.GGGGGTCC.AGGGGC.GGAGCCCCC..GGCGGGGGGCCCGGCGGCCGCGCGGGG.GAAAAAAAGACCCA.ACC.G.GGAA.GCCCCCCGGGGGGCCAG.GAACCCg                  >  2:2881707/1‑101 (MQ=12)


                                                                                       gCC.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCGGGGCGCCGCGCGGGCGCGC.GGC.GAAAAAAAAGACCC.ACC.C.GGCA.GCCCCCCGGGCGGGCCGTGGAACCgca                >  2:2108827/1‑99 (MQ=17)


                                                                                        cc.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCGGGGCGCCGCGCGGCCGCGC.GGC.GGAACAAAAGGCCG.ACC.G.GGCC.GCCCCCCCGCCGGCCCGGGAAcccccaa               >  1:4544294/1‑97 (MQ=18)


                                                                                         c.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCGGGGCCGCGCGGGGGCGCGC.GGC.GGAACAAAAGACCG.ACC.G.GGCA.GGCCCCCCGGCGGCCCGGGAAACCGaaaa              >  2:2394065/1‑100 (MQ=16)


                                                                                           gggggTCC.GGGGGC.GGAGCCCCC..GGCGGGGCGGCGCGCGGGCGCGC.GGG.GGAACAAAAGACCG.CCC.C.GGGA.GGCCCCCCGCCGGCCCGGGAAccccacaac             >  2:65735/1‑95 (MQ=12)


                                                                                           gggggTCC.GGGGGC.GGAGCCCCC..GGCGGGGCGCCGCCCGGCCGCGC.GGC.GGAACAAAAGAACG.ACC.G.GGCA.GCCCCCCCGCCGGCCCGGGAAACCCaaaac             >  1:4698820/1‑99 (MQ=18)


                                                                                             gggTCC.GGGGGC.GGAGCCCCC..GGCGGGGCGCCGCGCGGCCGCGC.GGC.GGAACAAAAGACCG.ACC.G.GGCA.GCCCCCCGGGCGGCCAGCGAACCCGCAAcgc.g          >  2:4818504/1‑101 (MQ=25)


                                                                                              ggTCC.GGGGGC.GGAGCCCCC..GGCGGGTCGCCGCGCGGCCGCGC.GGC.GAAACAAAGGACCG.ACC.G.GGCA.GCCCCCCGGTCGGCCAGTGAACCCGAAACGC.Ga         <  2:4101676/101‑1 (MQ=255)


                                                                                               gggcggggggG.GGCCCCCCG..GGCGGGTCGCCGCGCGGCCGCGC.GGC.GAAACAAAGGACCG.ACC.G.GGCA.GCCCCCCGGTCGGCCAGTGAACCCGAAACGC.Ga         <  2:4976707/96‑1 (MQ=38)


                                                                                               ggccggggggC.GGCGCCCCC..GGCGGGTCGCCGCGCGGCCGCGC.GGC.GAAACAAAGGACCG.ACC.G.GGCA.GCCCCCCGGTCGGCCAGTGAACCCGAAACGC.Ga         <  2:319579/96‑1 (MQ=255)


                                                                                                tCC.GGGGGC.GGGCCCCCC..GGCGGGTCGCCGCGCGGCCGCGC.GGC.GAAACAAAGGACCG.ACC.G.GGCA.GCCCCCCGGTCGGCCAGTGAACCCGAAACGC.GAAg       <  2:1144984/101‑1 (MQ=255)


                                                                                                 cc.GGGGGC.GGAGCCCCC..GGCGGGGCGCCGCGCGGCCGCGC.GGG.GGAAAAAAGGACCG.ACC.C.GGCC.GCCCCCCCGGCGGCCCGGGAACCCCAAACGC.GAAgg      >  1:1237373/1‑101 (MQ=21)


                                                                                                  c.GGGGGC.GGAGCCCCC..GGCGGGGCGCCGCGCGGCCGCGC.GGG.GGAACAAAAGACCG.ACC.G.GGCA.GCCCCCCCGCCGGCCCGGGGACCCCCAACGC.GAAggg     >  1:2876115/1‑101 (MQ=21)


                                                                                                  c.GGGGGC.GGAGCCCCC..GGCGGGGCGCCGCGCGGCCGCGC.GGC.GGAACAAAAGACCG.ACC.G.GGCC.GCCCCCCGGGCGGCCCGGGGACCCGAAACGC.GAAggg     >  1:298551/1‑101 (MQ=25)


                                                                                                  c.GGGGGC.GGAGCCCCC..GGCGGGGCGCCGCGCGGCCCCGC.GGC.GGAACAAAAGACCG.ACC.G.GGCA.GCCCCCCCGGCGGCCCGTGAACCCGCAACGC.GAAggg     >  1:1616311/1‑101 (MQ=25)


                                                                                                   ggggggG.GGCCCCCCG..GGCGGGTCGCCGCGCGGCCGCGC.GGC.GAAACAAAGGACCG.ACC.G.GGCA.GCCCCCCGGTCGGCCAGTGAACCCGAAACGC.GAAggg     <  1:1783484/100‑1 (MQ=38)


                                                                                                    gggggC.GGAGCCCCC..GGCGGGTCGCCCCCCGGGCGCGC.GGC.GGAAAAAAAGACCC.ACC.C.GGGA.GGCCCCCCGCCGGCCACTGAACCCCAAAcgccgcggga     >  2:44585/1‑94 (MQ=12)


                                                                                                     ggggG.GGACCCCCC..GGCGGGTCGCCGCGCGGCCGCGC.GGC.GAAACAAAGGACCG.ACC.G.GGCA.GCCCCCCGGTCGGCCAGTGAACCCGAAACGC.GAAGGGAc   <  1:5048783/101‑1 (MQ=255)


                                                                                                      gggC.GGCGCCCCC..GGCGGGTCGCCGCGCGGCCGCGC.GGC.GAAACAAAGGACCG.ACC.G.GGCA.GCCCCCCGGTCGGCCAGTGAACCCGAAACGC.GAAGGGAcg  <  2:1303914/101‑1 (MQ=255)


                                                                                                      gggC.GGAGCCCCC..GGCGGGGCGCCGCGCGGCCGCGC.GGC.GAAACAAAAGACCG.ACC.C.GGCA.GCCCCCCGGGCGGCCCGTGAACCCCAAACGCGGAAgggcg   >  2:4844744/1‑99 (MQ=25)


TAGCAGCCTGCACGACGGGGGCAAGGGGCAATGCGGCGCAAGGCCCCCCGGGCAACC.GGCCCCCGTTTCTTCTTGGCCC.AAATACGCC.GGGGGTCC.GGGGGC.GGAGCCCCC..GGCGGGTCGCCGCGCGGCCGCGC.GGC.GAAACAAAGGACCG.ACC.G.GGCA.GCCCCCCGGTCGGCCAGTGAACCCGAAACGC.GAAGGGACG  >  NC_014034/3276278‑3276476

Base quality scores:


ATCG

< 3 ≤


ATCG

< 20 ≤


ATCG

< 31 ≤


ATCG

< 34 ≤


ATCG

< 41 ≤


ATCG