New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 392494	98 (0.530)	16 (0.090)	11/150	18.6	0.23	intergenic (‑142/+1)	RCAP_rcc00363/trmD	hypothetical protein/tRNA (guanine‑N1)‑methyltransferase
	?	NC_014034	= 1699935	9 (0.040)					intergenic (+8/+35)	RCAP_rcc01568/purF	RES domain family protein/amidophosphoribosyltransferase
Rejected: Position hash score below cutoff.

CCCGAGCGCTGGCATCTGGTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGC.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAAT  >  NC_014034/1699835‑1700025                                                                                                     |                                                                                            ccggAGCGCTGGCATCTGGTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAagag                                                                                             <  2:1848968/98‑1 (MQ=255) cccGAGCGCTGGCATCTGGTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAagag                                                                                             <  1:4281802/101‑1 (MQ=255)  ccGAGCGCGGGCATCTGGTCCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGt                                                                                            <  2:762631/101‑1 (MQ=255)   cGAGCGCTGGCATCTGGTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGtt                                                                                           >  1:1992334/1‑101 (MQ=255)   cGAGCGCTGGCATCTGGTGCTGTTTCGCGGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGtt                                                                                           <  1:4458430/101‑1 (MQ=255)    gAGCGCTGGCATCTGGTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGttt                                                                                          <  2:2842329/101‑1 (MQ=255)    gAGCGCTGGCATCTGGTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGttt                                                                                          <  2:4108581/101‑1 (MQ=255)    gAGCGCTGGCATCTGGTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGttt                                                                                          <  1:1198711/101‑1 (MQ=255)    gAGCGCTGGCATCTGGTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGttt                                                                                          <  2:4783662/101‑1 (MQ=255)    gAGCGCTGGCATCTGGTGCTGTTTCGCGGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGttt                                                                                          <  1:1494745/101‑1 (MQ=255)    gAGCGCTGGCATCTGGGGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGttt                                                                                          <  1:3409114/101‑1 (MQ=255)     ggctcTGGCTTCTGGTGCTTTTTCGCTGGGGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTc                                                                                         <  1:2308099/97‑1 (MQ=255)     ggcgcGGGCATCTGGTGCTTTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTc                                                                                         <  2:2362235/100‑1 (MQ=255)     aGCGCTGGCATCTGGTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTc                                                                                         >  2:1463454/1‑101 (MQ=255)     aGCGCTGGCATCTGGTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTc                                                                                         >  1:3159788/1‑101 (MQ=255)     aGCGCGGGCATCTGGTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTc                                                                                         <  2:3035994/101‑1 (MQ=255)      gctcTGGCATTTGGTGCTTTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCg                                                                                        <  2:222602/98‑1 (MQ=255)      gcgcTGGCATCTGGTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCg                                                                                        <  2:2403934/101‑1 (MQ=255)       cgcTGGCATCTGGTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGc                                                                                       <  1:1929525/101‑1 (MQ=255)        gcTGGCATCTGGTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGcc                                                                                      <  2:2599980/101‑1 (MQ=255)         cgggCATCTGGGTCTGTTTCGCGGGGGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCt                                                                                     <  2:3695472/99‑1 (MQ=255)         cTGGCATCTGGTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCggcc                                                                                     >  1:4891774/1‑98 (MQ=255)         cTGGCATCTGGTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCt                                                                                     >  2:4558586/1‑101 (MQ=255)         cTGGCATCTGGTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCt                                                                                     <  2:966700/101‑1 (MQ=255)          tGGCATCTGGTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTc                                                                                    <  1:127656/101‑1 (MQ=255)          tGGCATCTGGTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTc                                                                                    <  2:2600444/101‑1 (MQ=255)           ggCATTTGGTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCg                                                                                   <  2:1021282/101‑1 (MQ=255)           ggCATCTGGTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCg                                                                                   >  1:3229620/1‑101 (MQ=255)           ggCATCTGGTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCg                                                                                   <  2:4295771/101‑1 (MQ=255)           ggCATCTGGTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCg                                                                                   >  2:3282240/1‑101 (MQ=255)            gCATCTGGTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCgg                                                                                  >  2:4636763/1‑101 (MQ=255)              aTCTGGTGCTGTTTCGCTGGGGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCt                                                                                <  2:741922/101‑1 (MQ=255)               tgtGGTGCTGTTTGGGTGGGGGGAGCCGCCGCTCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTg                                                                               <  1:3498239/99‑1 (MQ=255)               tcgggTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTg                                                                               <  2:1844320/98‑1 (MQ=255)               tCTGGTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGccg                                                                               >  2:3443950/1‑99 (MQ=255)               tCTGGTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTg                                                                               >  1:347680/1‑101 (MQ=255)               tCTGGTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTg                                                                               <  2:338217/101‑1 (MQ=255)                cTGGTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTgc                                                                              >  1:4846696/1‑101 (MQ=255)                  ggTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTgc.gc                                                                           >  2:4770768/1‑101 (MQ=255)                  ggTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTgc.gc                                                                           >  2:2560204/1‑101 (MQ=255)                   gTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGC.Gcc                                                                          <  1:2597953/101‑1 (MQ=255)                   gTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGC.Gcc                                                                          >  2:1747330/1‑101 (MQ=255)                   gTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGC.Gcc                                                                          <  2:1360301/101‑1 (MQ=255)                    tgtttttgcGCGGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGC.GCCg                                                                         <  1:4045289/93‑1 (MQ=255)                    tGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGGTTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGC.GCCg                                                                         >  1:2534349/1‑101 (MQ=255)                    tGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGC.GCCg                                                                         <  2:2705192/101‑1 (MQ=255)                     gCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGC.GCCGa                                                                        >  2:4173577/1‑101 (MQ=255)                       tGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGC.GCCGAgg                                                                      >  2:3067103/1‑101 (MQ=255)                       tGTTTCGCGGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGC.GCCGAgg                                                                      <  2:630569/101‑1 (MQ=255)                        ttttCGCTGGAGGGAGCCTCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGC.GCCGAGGc                                                                     <  1:1827850/100‑1 (MQ=255)                        gTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGC.GCCGAGGc                                                                     >  1:2843410/1‑101 (MQ=255)                        gTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGC.GCCGAGGc                                                                     >  2:1091932/1‑101 (MQ=255)                        gTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGC.GCCGAGGc                                                                     >  2:1145843/1‑101 (MQ=255)                        gTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGC.GCCGACGc                                                                     >  2:819462/1‑101 (MQ=255)                          ttCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGC.GCCGAGGCGa                                                                   >  2:2359826/1‑101 (MQ=255)                            cGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGC.GCCGAGGCGacc                                                                 <  1:392726/101‑3 (MQ=255)                            cGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGC.GCCGAGGCGacc                                                                 <  2:493345/101‑3 (MQ=255)                            cGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGC.GCCGAGGCGacc                                                                 >  1:3883290/1‑99 (MQ=255)                              ggggggggggCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGC.GCCGAGGCGacccg                                                               <  2:1518826/96‑5 (MQ=38)                               tGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGC.GCCGAGGCGacccgc                                                              >  1:2111922/1‑96 (MQ=255)                               tGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGC.GCCGAGGCGacccgc                                                              >  2:120113/1‑96 (MQ=255)                                ggagggagCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGC.GCCGAGGCGacccgcc                                                             >  1:1349699/1‑95 (MQ=255)                                ggagggagCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGC.GCCGAGGCGacccgcc                                                             >  2:3441923/1‑95 (MQ=255)                                 gagggagCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGC.GCCGAGGCGacccgccc                                                            >  2:2622421/1‑94 (MQ=255)                                  agggagCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGC.GCCGAGGCGacccgccgg                                                           >  2:4181632/1‑93 (MQ=255)                                    ggagCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGC.GCCGAGGCGacccgcccggg                                                         >  2:3828006/1‑91 (MQ=255)                                    ggagCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGC.GCCGAGGCGAAATACCCCCt                                                         >  2:374325/1‑101 (MQ=255)                                             gATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGC.GCCGAGGCGAAAAACCCCCTCAGCCCTTc                                                >  2:33599/1‑101 (MQ=255)                                                ctcGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGC.GCCGCGGCGAAATAACCCCCCAGCCCTTCATc                                             >  1:4406060/1‑101 (MQ=255)                                                           tGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGC.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCtt                                  <  1:192407/101‑1 (MQ=255)                                                                ggCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGC.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGa                             <  1:374378/101‑1 (MQ=255)                                                                     tctccAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGC.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGa                        <  2:319271/98‑1 (MQ=255)                                                                        ccAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGC.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGaaga                     >  1:319324/1‑98 (MQ=255)                                                                               gCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCGTCAGCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGc               >  1:846498/1‑101 (MQ=38)                                                                                           tGAGGGAAGAGTTTCGCCTCGGCTGC.GCCGAGGCGAACCGCCCCCCCCGCCCTTCCTCTTGCCGCCCCTGCCGCTCTGCTCGGAGGGCTCCACAGGATaac  >  1:4103892/1‑100 (MQ=19)                                                                                                     |                                                                                            CCCGAGCGCTGGCATCTGGTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGCTGC.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAAT  >  NC_014034/1699835‑1700025 Base quality scores:  ATCG  < 3 ≤  ATCG  < 19 ≤  ATCG  < 27 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG