New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 432513	156 (0.860)	105 (0.580)	42/148	6.7	0.57	intergenic (+116/+32)	RCAP_rcc00403/RCAP_rcc00404	hypothetical protein/Sua5/YciO/YrdC/YwlC family protein
	?	NC_014034	2600952 =	0 (0.000)					intergenic (+14/‑127)	RCAP_rcc02424/surE	short‑chain dehydrogenase/reductase family oxidoreductase/5'‑nucleotidase SurE
Rejected: Position hash score below cutoff.

CGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGGGCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATCA  >  NC_014034/2600859‑2601052                                                                                              |                                                                                                     cgcgcTTTTTCTCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGAGGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGGGcgggcccc                                                                                               >  2:3673376/1‑94 (MQ=255) cgcgcTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGGGctgccccc                                                                                               >  1:538722/1‑94 (MQ=255)                                                                                    ggggcagcgcccccTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGGGCAg            >  1:2014840/11‑101 (MQ=255)                                                                                    ggggcagcgcccccTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAg            <  2:2624251/91‑1 (MQ=255)                                                                                    ggggcagcgcccccTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAg            >  1:4677568/11‑101 (MQ=255)                                                                                    ggggcagcgcccccTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAg            >  2:579613/11‑101 (MQ=255)                                                                                     gggccgcccccccTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGc           <  2:4785989/92‑1 (MQ=255)                                                                                     gggcagcgcccccTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGc           >  2:554659/10‑101 (MQ=255)                                                                                     gggcagcgcccccTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGc           <  2:3268309/92‑1 (MQ=255)                                                                                     ggccagcccccccTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGc           <  1:3143250/92‑1 (MQ=255)                                                                                      ggcagcgcccccTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCg          >  1:1833766/9‑101 (MQ=255)                                                                                      gacggcgcccccTGCCCCGCCGGAGCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCCGCg          <  2:4999188/93‑1 (MQ=255)                                                                                       gcagcgcccccTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCACGTGCAGCGGCTTTGTTGTTTTGATGCCGCGGCGCgg         >  2:1604003/8‑101 (MQ=255)                                                                                       gcagcgcccccTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGGGCAGCgg         >  2:1839293/8‑101 (MQ=255)                                                                                        ccgcgcccccTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGc        <  1:359671/95‑1 (MQ=255)                                                                                         ggcccccccTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCt       <  1:4597049/96‑1 (MQ=255)                                                                                         cgcccccccGGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCt       <  2:4029375/96‑1 (MQ=255)                                                                                         cgcccccccCGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCt       <  2:4597380/96‑1 (MQ=255)                                                                                         cccccccccTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCt       <  1:3797566/96‑1 (MQ=255)                                                                                         agcgcccccTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCt       >  2:2141541/6‑101 (MQ=255)                                                                                         agcgcccccTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCt       >  1:3824307/6‑101 (MQ=255)                                                                                            gcccccTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTTGATGCAGCGCAGCGGCTAAt    >  2:3363573/3‑101 (MQ=255)                                                                                            gcccccTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAAt    <  2:2077595/99‑1 (MQ=255)                                                                                            gcccccTGCCCCGCCGGATCCGGGGCGGACCGGG.CCCCCAGGGCACACCTGCGCGCCAAGTGCAGGCGCTTTCTTTTTTTGGTGGGGGGCCGCGGCTaaat   >  2:2940197/3‑99 (MQ=255)                                                                                             cccccTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTTCTTGTTTGGCTGCGGCGCGGCGGCTAATc   >  2:4140367/2‑101 (MQ=255)                                                                                             cccccTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATc   <  2:4109658/100‑1 (MQ=255)                                                                                             cccccTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATc   <  1:1221601/100‑1 (MQ=255)                                                                                              ccccTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTTATca  >  1:3394920/1‑101 (MQ=255)                                                                                              |                                                                                                     CGCGCTTCTTCCCGTCCGAGGACCGCACGCCGCTGATCGATTGCCGCGACGAAGCGAAACGCCTTCTTGCCGAGATCTGACGGACGGGGGGGGCCCCTGCCCCGCCGGATCCGGGGCGGACCGGGTCCGCAAGGGCACACCTGCGCGCCAAGTGCAGCGGCTTGCTTGTTTGGCTGCGGCGCAGCGGCTAATCA  >  NC_014034/2600859‑2601052 Base quality scores:  ATCG  < 3 ≤  ATCG  < 16 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG