New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 510081	140 (0.600)	23 (0.100)	18/192	18.3	0.24	intergenic (+68/+119)	RCAP_rcc00475/RCAP_rcc00476	acyl‑CoA dehydrogenase domain‑containing protein/hypothetical protein
	?	NC_014034	= 974303	7 (0.030)					intergenic (+183/+76)	RCAP_rcc00884/RCAP_rcc00885	hypothetical protein/hypothetical protein
Rejected: Position hash score below cutoff.

CCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCG.TGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCC.C.GGG....GT..GTGCG.GAAGCCCCCGGCGGGTCGCCTCGGCGACAGCCGAGGCGAAATACCCCCGCCGCAACGGCCGGTTCTC  >  NC_014034/974204‑974380                                                                                                      |                                                                                      ccccGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATcc.c                                                                                       <  1:1942449/101‑1 (MQ=255)  cccGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCCCCTTGCGACAAATATCC.C.g                                                                                     >  1:565942/1‑101 (MQ=255)    cGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTTACCTTGCGCCAAATATCC.C.cgg                                                                                   >  2:4582272/1‑101 (MQ=38)    cGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTTACCTTGCGACAAATATCC.C.ggg                                                                                   >  2:1134664/1‑101 (MQ=255)    cGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCC.C.ggg                                                                                   >  1:2507632/1‑101 (MQ=255)    cGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCC.C.ggg                                                                                   >  2:453677/1‑101 (MQ=255)     ggACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGGCAAATATCC.C.ggg....g                                                                              >  2:575230/1‑101 (MQ=255)       aCCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTTACCTTGCGACAAATATTC.C.ggg....ggg                                                                            >  2:4505351/1‑99 (MQ=38)       aCCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCC.C.ggg....ggg                                                                            >  1:3158369/1‑99 (MQ=255)        ccccccAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCC.C.ggg....ggtc                                                                           <  1:2331296/101‑4 (MQ=255)         cccccAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTTACCCTTCGACCAAAATCC.C.cgg....gggcc                                                                          >  1:2720924/1‑97 (MQ=25)          ccccAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCC.C.ggg....ggtccg                                                                         <  2:745163/101‑6 (MQ=255)                                           ggcgggATCGGGCAGGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCGG.GGG....GTCCGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGAc                                         <  2:1200225/101‑1 (MQ=2)                                            gcgggATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCC.CGGGG....GTCCGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGACa                                        <  2:610303/101‑1 (MQ=14)                                                        ggggccgctGCGCGGGGGTTTGTTTTCCCCTTGCGACAAATCCCC.G.GGGGGCCGG..GGGGG.GGAGCCCCCGGCGGGTCGCCTCGGCGACAGCCGAGGCGaaa                            <  1:3726384/93‑1 (MQ=0)                                                                            tGTTTTCACCTTGCGACAAATATCC.CGGGG....GTCCGGGGGCGGAGCCCCCGGCGGGGCGGCGCGGGGGGAGCCGAGGCGGAAAAACACCGCCGCacccggcc        >  1:1444707/1‑94 (MQ=2)                                                                               tttCACCTTGCGACAAATATCC.CGGGG....GTCCGGGGGCGGAGCCCCCGGCGGGGGGCCCCGGCGGCCGCCGCGGCGGAAAACACCCGCCCCACCCGCCgggt     >  1:2736440/1‑99 (MQ=2)                                                                               tttCACCTTGCGACAAATATCC.CGGGG....GTCCGGGGGCGGAGCCCCCGGCGGGGCGGCCCGGCGGCCGCCGCGGGGGAAAAAACCCGCCGCCACCGCCgggg     >  2:88855/1‑99 (MQ=2)                                                                                  cACCTTGCGACAAATATCC.C.GGGT...GTCCGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGACAGCCGAGGCGAAATACCCCGGCCGCAACGGCCGGTtctc  <  2:4788687/101‑1 (MQ=14)                                                                                                      |                                                                                      CCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCG.TGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCC.C.GGG....GT..GTGCG.GAAGCCCCCGGCGGGTCGCCTCGGCGACAGCCGAGGCGAAATACCCCCGCCGCAACGGCCGGTTCTC  >  NC_014034/974204‑974380 Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 25 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG