New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 744688	110 (0.520)	23 (0.110)	18/172	16.8	0.28	intergenic (+73/+139)	idi2/bchO	isopentenyl‑diphosphate delta‑isomerase/magnesium‑chelatase BchO
	?	NC_014034	= 974293	7 (0.030)					intergenic (+173/+86)	RCAP_rcc00884/RCAP_rcc00885	hypothetical protein/hypothetical protein
Rejected: Position hash score below cutoff.

CGCCGTCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCG.TGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCC.C.GGG....GT..GTGCG.GAAGCCCCCGGCGGGTCGCCTCGGCGACAGCCGAGGCGAAATACCCCCGCCGCAACGGCCGGTTCTC  >  NC_014034/974194‑974380                                                                                                     |                                                                                                 gggcttCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTTACCTTGCGa                                                                                                  >  1:610382/6‑101 (MQ=37)  ggcttCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGAc                                                                                                 <  2:4701755/97‑1 (MQ=255)  ggcttCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGAc                                                                                                 >  2:1942312/5‑101 (MQ=255)    cttCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTTCGGCaa                                                                                               >  2:4394507/3‑101 (MQ=38)    cttCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACaa                                                                                               >  2:3742387/3‑101 (MQ=255)    cttCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACaa                                                                                               <  1:2604560/99‑1 (MQ=255)    cttCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGGTTTCTCCTTGCGACaa                                                                                               >  2:4676226/3‑101 (MQ=37)     ttCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACaaa                                                                                              >  2:4724014/2‑101 (MQ=255)     ttCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACaaa                                                                                              >  1:1828298/2‑101 (MQ=255)     ttCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACaaa                                                                                              <  2:2422167/100‑1 (MQ=255)       cGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGCCGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACaaaga                                                                                            >  1:1200342/1‑99 (MQ=255)        gCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTTACCTTCCGACAAaaat                                                                                           >  2:941001/1‑101 (MQ=38)          cccccGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGGTTTGGACTTTCGACAAATATcc                                                                                         >  1:3068661/1‑101 (MQ=37)           ccccGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATcc.c                                                                                       <  1:1942449/101‑1 (MQ=255)            cccGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCCCCTTGCGACAAATATCC.C.g                                                                                     >  1:565942/1‑101 (MQ=255)              cGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTTACCTTGCGCCAAATATCC.C.cgg                                                                                   >  2:4582272/1‑101 (MQ=38)              cGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTTACCTTGCGACAAATATCC.C.ggg                                                                                   >  2:1134664/1‑101 (MQ=255)              cGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCC.C.ggg                                                                                   >  2:453677/1‑101 (MQ=255)              cGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCC.C.ggg                                                                                   >  1:2507632/1‑101 (MQ=255)               ggACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGGCAAATATCC.C.ggg....g                                                                              >  2:575230/1‑101 (MQ=255)                 aCCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTTACCTTGCGACAAATATTC.C.ggg....ggg                                                                            >  2:4505351/1‑99 (MQ=38)                 aCCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCC.C.ggg....ggg                                                                            >  1:3158369/1‑99 (MQ=255)                  ccccccAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCC.C.ggg....ggtc                                                                           <  1:2331296/101‑4 (MQ=255)                   cccccAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTTACCCTTCGACCAAAATCC.C.cgg....gggcc                                                                          >  1:2720924/1‑97 (MQ=25)                    ccccAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCC.C.ggg....ggtccg                                                                         <  2:745163/101‑6 (MQ=255)                                                     ggcgggATCGGGCAGGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCGG.GGG....GTCCGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGAc                                         <  2:1200225/101‑1 (MQ=2)                                                      gcgggATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCC.CGGGG....GTCCGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGACa                                        <  2:610303/101‑1 (MQ=14)                                                                  ggggccgctGCGCGGGGGTTTGTTTTCCCCTTGCGACAAATCCCC.G.GGGGGCCGG..GGGGG.GGAGCCCCCGGCGGGTCGCCTCGGCGACAGCCGAGGCGaaa                            <  1:3726384/93‑1 (MQ=0)                                                                                      tGTTTTCACCTTGCGACAAATATCC.CGGGG....GTCCGGGGGCGGAGCCCCCGGCGGGGCGGCGCGGGGGGAGCCGAGGCGGAAAAACACCGCCGCacccggcc        >  1:1444707/1‑94 (MQ=2)                                                                                         tttCACCTTGCGACAAATATCC.CGGGG....GTCCGGGGGCGGAGCCCCCGGCGGGGGGCCCCGGCGGCCGCCGCGGCGGAAAACACCCGCCCCACCCGCCgggt     >  1:2736440/1‑99 (MQ=2)                                                                                         tttCACCTTGCGACAAATATCC.CGGGG....GTCCGGGGGCGGAGCCCCCGGCGGGGCGGCCCGGCGGCCGCCGCGGGGGAAAAAACCCGCCGCCACCGCCgggg     >  2:88855/1‑99 (MQ=2)                                                                                            cACCTTGCGACAAATATCC.C.GGGT...GTCCGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGACAGCCGAGGCGAAATACCCCGGCCGCAACGGCCGGTtctc  <  2:4788687/101‑1 (MQ=14)                                                                                                     |                                                                                                 CGCCGTCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCG.TGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCC.C.GGG....GT..GTGCG.GAAGCCCCCGGCGGGTCGCCTCGGCGACAGCCGAGGCGAAATACCCCCGCCGCAACGGCCGGTTCTC  >  NC_014034/974194‑974380 Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 25 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG