| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 1,395,751 | C→T | 15.4% | intergenic (+563/‑368) | RCAP_rcc01306 → / → RCAP_rcc01307 | Cas2 family CRISPR‑associated protein/hypothetical protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 1,395,751 | 0 | C→T | 15.4% | 121.5 ‑0.9 ‑0.0 | 293 | intergenic (+563/‑368) | RCAP_rcc01306/RCAP_rcc01307 | Cas2 family CRISPR‑associated protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (19/26): ref base (123/124): total (143/150) | ||||||||||
| Fisher's exact test strand distribution p-value = 4.18e-01 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.85e-01 | ||||||||||
Only 100 of 309 total aligned reads displayed.
GCGTGGATCGAAACATCTGCATGTAGTCGGCGGGCAGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCTG..GCGCAAACGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGC > NC_014034/1395651‑1395851
|
tGGATCGAAACATCTGCATGTAGTCGGCGGGCAGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCTG..GCGCAAACGG..a > 1:1350671/1‑101 (MQ=255)
ggATCGAAACATCTGCATGTAGTCGGCGGGCAGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCTG..GCGCAAACGG..aa > 2:170361/1‑101 (MQ=255)
gATCGAAACATCTGCATGTAGTCGGCGGGCAGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCTG..GCGCAAACGG..aaa > 2:3665253/1‑101 (MQ=255)
aTCGAAACATCTGCATGTAGTCGGCGGGCAGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCTG..GCGCAAACGG..AAAg < 2:3590980/101‑1 (MQ=255)
cGAAACATCTGCATGTAGTCGGCGGGCAGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCTG..GCGCAAACGG..AAAGTc < 2:2886316/101‑1 (MQ=255)
cGAAACATCTGCATGTAGTCGGCGGGCAGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCTG..GCGCAAACGG..AAAGTc > 2:2767760/1‑101 (MQ=255)
gAAACATCTGCATGTAGTGGGCGGGCAGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCTG..GCGCAAACGG..AAAGCCt > 2:2138198/1‑101 (MQ=255)
gAAACATCTGCATGTAGTCGGCGGGCAGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCTG..GCGCAAACGG..AAAGTCt > 2:4286436/1‑101 (MQ=255)
gAAACATCTGCATGTAGTCGGCGGGCAGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCTG..GCGCAAACGG..AAAGTCt > 2:1940270/1‑101 (MQ=255)
aaaCATCTGCATGTAGTCGGCGGGCAGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCTG..GCGCAAACGG..AAAGTCT.g > 1:3585406/1‑101 (MQ=255)
aaaCATCTGCATGTAGTCGGCGGGCAGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCTG..GCGCAAACGG..AAAGTCT.g > 1:2734176/1‑101 (MQ=255)
aaaCATCTGCATGTAGTCGGCGGGCAGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCTG..GCGCAAACGG..AAAGTCT.g < 1:89249/101‑1 (MQ=255)
cATCTGCATGTAGTCGGCGGGCAGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCTG..GCGCAAACGG..AAAGTCT.g.tcg > 1:2817565/1‑101 (MQ=255)
cTGCATGTAGTCGGCGGGCAGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCTG..GCGCAAACGG..AAAGTCT.G.tcgtcg > 1:3700067/1‑101 (MQ=255)
cTGCATGTAGTCGGCGGGCAGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCTG..GCGCAAACGG..AAAGTCT.G.tcgtcg > 1:2398007/1‑101 (MQ=255)
aTGTAGTCGGCGGGAAGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCTG..GCGCAAACGG..AAAGTCT.G.TCGTCGCT.cc < 1:3124245/101‑1 (MQ=255)
tGTAGTCGGCGGGCAGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCTG..GCGCAAACGG..AAAGTCT.G.TCGTCGCT.ccc > 2:228840/1‑101 (MQ=255)
ggTAGTCGGCGGGCAGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCTG..GCGCAAACGG..AACGTCT.G.TCGTCGCT.ccc < 1:4413511/100‑1 (MQ=255)
ggTCGGCGGGCAGTCCGAGCCGCAGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCTG..GCGCAAACGG..AAAGTCT.G.TCGTCGCT.cccccc < 2:516703/100‑1 (MQ=255)
cggcggcggGCAGTTCGACCCGCTGTCGCTGCCCCCGCGGGGGCGTGGATCTAAACT.GGTTTGGATCTG..GCGCAAACGG..AAAGTCT.G.TCGTCGCT.cccccc < 1:798152/98‑1 (MQ=38)
cggcggGCAGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCTG..GCGCAAACGG..AAAGTCT.G.TCGTCGCT.CCCCCcgcg > 2:5037830/1‑101 (MQ=255)
gggCAGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCTG..GCGCAAACGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCggggg > 1:4037085/1‑101 (MQ=255)
ggCGGTCCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCTG..GCGCAAACGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGc < 1:3888888/101‑1 (MQ=255)
gCAGTGCGAGCCGCAGTCGCGCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCTG..GCGCAAACGG..AAAGTCT.G.TCGTCGCTCCCCCCCGCGGGGGc < 2:2617497/101‑1 (MQ=38)
aGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCTG..GCGCAAACGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGCGTg > 2:3345035/1‑101 (MQ=255)
aGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCTG..GCGCAAACGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGCGTg < 1:323472/101‑1 (MQ=255)
gtgcGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCTG..GCGCAAACGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGCGTgg < 1:2186852/98‑1 (MQ=255)
tCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCTG..GCGCAAACGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGCGTGGAt > 2:4982523/1‑101 (MQ=255)
caagattcAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATC..GCCGATCTGGGTAAGGCCG.G.TGGTCGCT.CCCCCCGCGGGGGCGTgg < 1:4882990/94‑1 (MQ=2)
cGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCTG..GCGCAAACGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGCGTGGATc < 2:721739/101‑1 (MQ=255)
cGAGCCGCAGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCTG..GCGCAAACGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGCGTGGATc < 2:4260367/101‑1 (MQ=255)
gAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCTG..GCGCAAACGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCg < 1:2328698/101‑1 (MQ=255)
agattcAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATC..GCCGATCTGGGTAAGGCCG.G.TGGTCGCT.CCCCCCGCGGGGGCGTGGAt > 2:1988707/6‑101 (MQ=2)
gattcAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATC..GCCGATCTGGGTAAGGCCG.G.TGGTCGCT.CCCCCCGCGGGGGCGTGGATc > 2:1027640/5‑101 (MQ=2)
attcAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATC..GCCGATCTGGGTAAGGCCG.G.TGGTCGCT.CCCCCCGCGGGGGCGTGGATCg < 1:4809219/98‑1 (MQ=2)
ttcAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATC..GCCGATCTGGGTACGGCCG.G.TGGTCGCT.CCCCCCGCGGGGGCGCGGATCGa > 1:4263048/3‑101 (MQ=0)
ttcAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATC..GCCGATCTGGGTAAGGCCG.G.TGGTCGCT.CCCCCCGCGGGGGCGTGGATCGa < 2:1436274/99‑1 (MQ=2)
ttcAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATC..GCCGATCTGGGTAAGGCCG.G.TGGTCGCT.CCCCCCGCGGGGGCGTGGATCGa < 1:2681320/99‑1 (MQ=2)
cGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCTG..GCGCAAACGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAAc < 1:69988/101‑1 (MQ=255)
gCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCTG..GCGCAAACGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAAcc > 2:4111666/1‑101 (MQ=255)
tggTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.TG.AT.GACCAGATCCGCAATCGG..CCGGGCTCGATCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAAc > 2:2308317/3‑101 (MQ=2)
cAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCTG..GCGCAAACGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCt < 1:1941386/101‑1 (MQ=255)
ggTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.TG.AT.GACCAGATCCGCAATCGG..CCGGGCTCGATCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAAcc > 1:130646/2‑101 (MQ=2)
gTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATC..GCCGATCTGGGTAAGGCCG.G.TGGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAAca > 1:1683291/1‑100 (MQ=2)
gTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.TG.AT.GACCAGATCCGCAATCGG..CCGGGCTCGATCGGCGCT.CCCCCCGCGGGGGCGGGGATCGAAACCt > 2:4754906/1‑101 (MQ=2)
gTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCTG..GCGCAAACGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTgc > 2:4007226/1‑101 (MQ=255)
tCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCTG..GCGCAAACGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTgcg > 2:123139/1‑101 (MQ=255)
tCGCCCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCTG..GCGCAAACGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTgcg < 1:4286753/101‑1 (MQ=255)
cGCTCCCCCCGCGGGGGTGTGGATCGAAACT.TG.AT.GACCAGATCCGCAATCGG..CCGGGCTCGATCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCtat < 2:4539446/101‑3 (MQ=2)
cGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATC..GCCGATCTGGGTAAGGCCG.G.TGGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAAcacc > 2:490366/1‑98 (MQ=2)
cGCTCCCCCCGCGGGGGCGTGGATCGAAACT.TG.AT.GACCAGATCCGCAATCGG..CCGGGCTCGATCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCtat < 1:4949381/101‑3 (MQ=2)
cGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCTG..GCGCAAACGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTgcgg < 1:4564855/101‑1 (MQ=255)
cGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCTG..GCGCAAACGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTgcgg > 1:452418/1‑101 (MQ=255)
cGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCTG..GCGCAAACGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCCgcgg > 1:2222896/1‑101 (MQ=255)
cGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCTG..GCGCAAACGG..AAAGGCT.G.TCCTCGCT.CCCCCCGCGGGGGCGGGGCTCGAAAGCTgtgg > 2:4184789/1‑101 (MQ=25)
gCTCCCCCCGCGGGGGCGTGGATCGAAACT.TG.AT.GACCAGATCCGCAATCGG..CCGGGCTCGATCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCtatg < 2:5007659/101‑4 (MQ=2)
ccccccccGGGGGGGCGTGGATCGAAACTCGGCAAGGACATC..GCCGATCTGGGTAAGGCCG.G.TGGTCGCC.CCCCCCGCGGGGGCGTGGATCGAAAcacccg < 1:2651617/99‑6 (MQ=2)
cTCCCCCCGCGGGGGCGTGGATCGAAACT.TG.AT.GACCAGATCCGCAATCGG..CCGGGCTCGATCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCtatga < 1:4987852/101‑5 (MQ=2)
tCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATC..GCCGATCTGGGTAAGGCCG.G.TGGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAAcacccgg > 2:4618857/1‑95 (MQ=2)
cccccccGCGGGGGCGTGGATCGAAACTCGGCAAGGACATC..GCCGATCTGGGTAAGGCCG.G.TGGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAAcacccgg < 2:2086059/100‑7 (MQ=0)
cccccccGCGGGGGCGTGGATCGAAACTCGGCAAGGACATC..GCCGATCTGGGTAAGGCCG.G.TGGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAAcacccgg < 2:3894399/100‑7 (MQ=0)
ccccccGCGGGGGCGTGGATCGAAACTCGGCAAGGACATC..GCCGATCTGGGTAAGGCCG.G.TGGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAAcacccggc > 2:1887599/1‑94 (MQ=0)
ccccccGCGGGGGCGTGGATCGAAACTCGGCAAGGACATC..GCCGATCTGGGTAAGGCCG.G.TGGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAAcacccggc > 2:1542296/1‑94 (MQ=0)
cccccGCGGGGGCGTGGATCGAAACTCGGCAAGGACATC..GCCGATCTGGGTAAGGCCG.G.TGGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAAcacccggcg > 2:3771739/1‑93 (MQ=2)
cccGCGGGGGCGTGGATCGAAACT.GGTATGGATCTG..GCGCAAACGG..AAAGTCT.G.TCGGCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGt < 1:4623008/101‑1 (MQ=255)
gcgGGGGCGTGGATCGAAACT.GGTATGGATCTG..GCGCAAACGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGc < 2:3127920/101‑1 (MQ=255)
ggCGTGGATCGAAACT.GGTATGGATCTG..GCGCAAACGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGCGCGGATCGAAACCTGCGGCGTGAGTTGCCAGTg > 1:3621578/1‑101 (MQ=255)
cGTGGATCGAAACT.GGTATGGATCTG..GCGCAAACGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGAt < 2:2696841/101‑1 (MQ=255)
gATCGAAACT.GGTATGGATCTG..GCGCAAACGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGAc < 2:4838469/101‑1 (MQ=255)
cGAAACT.GGTATGGATCTG..GCGCAAACGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGcc < 1:2080246/101‑1 (MQ=255)
gAAACT.GGTATGGATCTG..GCGCAAACGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCg > 1:3327564/1‑101 (MQ=255)
gAAACT.GGTATGGATCTG..GCGCAAACGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGCGATAGACGACg > 2:4598871/1‑101 (MQ=255)
aaaCT.GGTATGGATCTG..GCGCAAACGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCgg > 1:1093676/1‑100 (MQ=255)
aCT.GGTATGGATCTG..GCGCAAACGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTgg < 2:2958186/101‑1 (MQ=255)
aCT.GGTATGGATCTG..GCGCAAACGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGCGCGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTgg > 1:2971400/1‑101 (MQ=255)
cT.GGTATGGATCTG..GCGCAAACGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGa > 2:2219080/1‑101 (MQ=255)
cT.GGTATGGATCTG..GCGCAAACGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGa > 2:4311946/1‑101 (MQ=255)
t.GGTATGGATCTG..GCGCAAACGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGAc > 1:1873195/1‑101 (MQ=255)
gTATGGATCTG..GCGCAAACGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGt < 1:1608947/101‑1 (MQ=255)
tATGGATCTG..GCGCAAACGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTc > 1:2558902/1‑101 (MQ=255)
aTGGATCTG..GCGCAAACGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACgctg > 1:2485892/1‑98 (MQ=255)
tGGATCTG..GCGCAAACGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGc > 2:4436599/1‑101 (MQ=255)
ggATCTG..GCGCAAACGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCt > 1:3807805/1‑101 (MQ=255)
ggATCTG..GCGCAAACGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTCATAGACGCCGTGGACGTCGCt > 2:3399631/1‑101 (MQ=255)
ggATCTG..GCGCAAACGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCCAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCt < 2:4362772/101‑1 (MQ=255)
aTCTG..GCGCAAACGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTcc < 1:3425773/101‑1 (MQ=255)
tG..GCGCAAACGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTccccc < 2:3862515/101‑1 (MQ=255)
tG..GCGCAAACGG..AAAGTCT.G.GCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTccccc < 1:521250/101‑1 (MQ=255)
g..gCGCAAACGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTcccccc > 1:4010479/1‑101 (MQ=255)
g..gCGCAAACGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTcccccc < 1:3050235/101‑1 (MQ=255)
g..gCGCAAACGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTcccccc < 1:929284/101‑1 (MQ=255)
g..gCGCAAACGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTcccccc < 2:2233526/101‑1 (MQ=255)
g..gCGCAAACGG..AAAGTCT.G.TCGTCGCC.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTcccccc < 1:2115748/101‑1 (MQ=255)
gcgcAAACGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTccccccc > 2:352936/1‑100 (MQ=255)
gcgcAAACGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCcg < 2:369860/101‑1 (MQ=255)
cAAACGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCgg > 1:1500376/1‑101 (MQ=255)
cAAACGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCgg > 1:4738905/1‑101 (MQ=255)
cGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGc < 1:3482243/101‑1 (MQ=255)
cGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGc > 1:1230956/1‑101 (MQ=255)
cGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGc < 1:1008604/101‑1 (MQ=255)
|
GCGTGGATCGAAACATCTGCATGTAGTCGGCGGGCAGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCTG..GCGCAAACGG..AAAGTCT.G.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGC > NC_014034/1395651‑1395851
Base quality scores:
ATCG
< 3 ≤
ATCG
< 19 ≤
ATCG
< 27 ≤
ATCG
< 33 ≤
ATCG
< 40 ≤
ATCG
|