| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 1,699,950 | C→A | 23.3% | intergenic (+23/+20) | RCAP_rcc01568 → / ← purF | RES domain family protein/amidophosphoribosyltransferase |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 1,699,950 | 0 | C→A | 23.3% | 24.9 ‑0.3 ‑0.7 | 43 | intergenic (+23/+20) | RCAP_rcc01568/purF | RES domain family protein/amidophosphoribosyltransferase |
| Reads supporting (aligned to +/- strand): new base (5/5): ref base (20/13): total (25/18) | ||||||||||
| Fisher's exact test strand distribution p-value = 7.17e-01 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.82e-01 | ||||||||||
CTGGTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGC > NC_014034/1699850‑1700046
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cTGGTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.Tgc > 1:4846696/1‑101 (MQ=255)
ggTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.Tgc.gc > 2:4770768/1‑101 (MQ=255)
ggTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.Tgc.gc > 2:2560204/1‑101 (MQ=255)
gTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.Gcc < 2:1360301/101‑1 (MQ=255)
gTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.Gcc > 2:1747330/1‑101 (MQ=255)
gTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.Gcc < 1:2597953/101‑1 (MQ=255)
tgtttttgcGCGGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCg < 1:4045289/93‑1 (MQ=255)
tGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGGTTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCg > 1:2534349/1‑101 (MQ=255)
tGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCg < 2:2705192/101‑1 (MQ=255)
gCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGa > 2:4173577/1‑101 (MQ=255)
tGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGAgg > 2:3067103/1‑101 (MQ=255)
tGTTTCGCGGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGAgg < 2:630569/101‑1 (MQ=255)
ttttCGCTGGAGGGAGCCTCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGAGGc < 1:1827850/100‑1 (MQ=255)
gTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGAGGc > 1:2843410/1‑101 (MQ=255)
gTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGAGGc > 2:1145843/1‑101 (MQ=255)
gTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGAGGc > 2:1091932/1‑101 (MQ=255)
gTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGACGc > 2:819462/1‑101 (MQ=255)
ttCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGAGGCGa > 2:2359826/1‑101 (MQ=255)
cGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGAGGCGacc < 2:493345/101‑3 (MQ=255)
cGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGAGGCGacc < 1:392726/101‑3 (MQ=255)
cGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGAGGCGacc > 1:3883290/1‑99 (MQ=255)
ggggggggggCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGAGGCGacccg < 2:1518826/96‑5 (MQ=38)
tGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGAGGCGacccgc > 2:120113/1‑96 (MQ=255)
tGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGAGGCGacccgc > 1:2111922/1‑96 (MQ=255)
ggagggagCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGAGGCGacccgcc > 1:1349699/1‑95 (MQ=255)
ggagggagCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGAGGCGacccgcc > 2:3441923/1‑95 (MQ=255)
gagggagCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGAGGCGacccgccc > 2:2622421/1‑94 (MQ=255)
agggagCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGAGGCGacccgccgg > 2:4181632/1‑93 (MQ=255)
ggagCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGAGGCGacccgcccggg > 2:3828006/1‑91 (MQ=255)
ggagCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGAGGCGAAATACCCCCt > 2:374325/1‑101 (MQ=255)
gATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGAGGCGAAAAACCCCCTCAGCCCTTc > 2:33599/1‑101 (MQ=255)
ctcGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGCGGCGAAATAACCCCCCAGCCCTTCATc > 1:4406060/1‑101 (MQ=255)
tGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCtt < 1:192407/101‑1 (MQ=255)
ggCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGa < 1:374378/101‑1 (MQ=255)
tctccAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGa < 2:319271/98‑1 (MQ=255)
ccAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGaaga > 1:319324/1‑98 (MQ=255)
gCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.GTCAGCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGc > 1:846498/1‑101 (MQ=38)
tGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGAGGCGAACCGCCCCCCCCGCCCTTCCTCTTGCCGCCCCTGCCGCTCTGCTCGGAGGGCTCCACAGGATaac > 1:4103892/1‑100 (MQ=19)
gcggcccgggtCGCCTCGGCGTCA.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCg < 2:1831146/91‑1 (MQ=25)
ccccgccgggtCGCCTCGGCGTCA.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCg > 2:2831891/11‑101 (MQ=25)
ccccgggtCGCCTCGGCGTCA.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGccc < 2:1131170/94‑1 (MQ=37)
cccgggtCGCCTCGGCGTCA.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCg < 2:3552265/95‑1 (MQ=37)
ccgggtCGCCTCGGCGTCA.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCga < 1:1441376/96‑1 (MQ=37)
gggtCGCCTCGGCGTCA.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCgcga > 2:4291865/4‑101 (MQ=37)
gggtCGCCTCGGCGTCA.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCgaga > 1:198195/4‑101 (MQ=38)
tCGCCTCGGCGTCA.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAAc > 2:2734351/1‑101 (MQ=38)
tCGCCTCGGCGTCA.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAAc < 2:3480562/101‑1 (MQ=38)
tCGCCTCGGC.GTCAGCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAAc > 1:2897567/1‑101 (MQ=38)
cGCCTCGGCGTCA.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACa > 2:681178/1‑101 (MQ=38)
tCGGC.TGC.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGt < 1:2237897/101‑1 (MQ=255)
gC.TGC.GCCGAGGCGAAATCCCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGc < 2:114850/101‑1 (MQ=255)
|
CTGGTGCTGTTTCGCTGGAGGGAGCCGCCGATCTCGGCGCAACTGACCGGCCATCGCCAGCCTGCGGATTTCGGTTGAGGGAAGAGTTTCGCCTCGGC.TGC.GCCGAGGCGAAATACCCCCTCAGCCCTTCATCTTGAAGCCCTTGCCGATCTGATCGGAGGGCTTCACCGGATAATCGCCCGAGAAACAGGCGTCGC > NC_014034/1699850‑1700046
Base quality scores:
ATCG
< 3 ≤
ATCG
< 20 ≤
ATCG
< 27 ≤
ATCG
< 34 ≤
ATCG
< 41 ≤
ATCG
|