| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 1,732,868 | T→C | 12.9% | intergenic (‑292/‑111) | RCAP_rcc01601 ← / → tgt | FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 1,732,868 | 0 | G→C | 12.9% | 4.3 0.0 ‑1.1 | 31 | intergenic (‑292/‑111) | RCAP_rcc01601/tgt | FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase |
| Reads supporting (aligned to +/- strand): new base (0/4): ref base (5/22): total (5/26) | ||||||||||
| Fisher's exact test strand distribution p-value = 1.00e+00 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 8.01e-02 | ||||||||||
TCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTC.GGGGGGGCGGGGGGTGAAGCCCCC..C...GT...C...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGC > NC_014034/1732788‑1732948
|
ccAACAGGCAAGGGCCCCGCTTTTCCTAGGAAAAATACCCCTTTCTTTCTTTGG.GGGGGGGGGGGGGGGGAAGCCCCC..C...GCGGGT...CG.CCTCGGGCTTGccc < 2:4476187/100‑1 (MQ=12)
cAACGGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTC.GGGGGGGCGGGGGGTGAAGCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCg < 2:4201378/101‑1 (MQ=21)
aGGCAGGGGCCCCGCTGTTCCTAGGCAAAATACGCCCTTCTTTCTTTTC.GGGGGGGCGGGGGGTGAAGCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGc < 2:3335678/101‑1 (MQ=18)
ggcgggggCCCCGTTTTTCCTGGGCAAAACCCCCCTTTTTTTCTTTGG.GGGGGGGGGGGGGGTGAACCCCCC..C...GCGGGT...CG.CCTCGGGCTTGCCCGAGGCg < 1:1639593/96‑1 (MQ=2)
aggcacccgtcTTTTCCGAGGCAAAAAACGCCCTTCTTTCTTTGC.GGGGGGGGGGGGTGGAAATCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGaaa < 2:1609115/91‑1 (MQ=9)
aGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTGTTC.GGGGGGGCGGGGGGGGAAGCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAg < 1:2118920/101‑1 (MQ=18)
gggCCCCGCTTTTCCTAGCCAAAATCCGCCCTTCTTTCTTTTG.GGGGGGGCGGGGGGTGAAGCCCCC..C...GCGGGT...CG.CCTCGGGCTTGCCCGAGGCGAAAGc < 2:389012/101‑1 (MQ=17)
ccccGTTTTCCTTGGGAAAAATCCGCCTTTTTTTCTTTCG.GGGGGGGGGGGGGGTGAGCCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTc < 2:4907067/101‑1 (MQ=0)
cgttttgcttAGGAAAAATCCGCCTTTTTTTTTTTGG.GGGGGGGGGGGGGGGGAACCCCCC..C...GC...GGGTCG.CCTCGGGCTTGCCCGAGGCGAAAGCTTcccc < 1:3700412/92‑1 (MQ=2)
ggCAAAATCCGCCTTTCTTTCTTTGG.GGGGGGGCGGGGGGGGAAGCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAAcc < 2:1946435/101‑1 (MQ=14)
aaaaTACGCCCTTCTTTCTTTTC.GGGGGGGCGGGGGGTTAAGCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGCGGAAACCTTg > 1:403538/1‑101 (MQ=18)
aagtACGCCCTTCTTTCTTTTC.GGGGGGGCGGGGGGTGAAGCCTCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGc < 1:219711/98‑1 (MQ=18)
aaaTACGCCCTTCTTTCTTTTC.GGGGGGGCGGGGGGGGGAGCCCCC..CCCGGG...G...CGCCCCCGGGCTTGCCCGGGGCGAAGGGTCCCCCCCCCGAAAAcccct > 2:4911729/1‑98 (MQ=255)
tccGCCCTTTTTTGTTTGG.GGGGGGGCGGGGGGTGAAGCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTg < 1:2235457/99‑1 (MQ=14)
cccccTTTTTTTTTTTG.GGGGGGGGGGGGGGTAACCCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTgcg < 1:1294113/99‑1 (MQ=12)
cGCCTTTCTTTCTTTTC.GGGGGGGCGGGGGGTGAAGCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTgcg < 1:783118/101‑1 (MQ=18)
cGCCCTTTTTTCTTTTG.GGGGGGGCGGGGGGTGAAGCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTgcg < 2:4808478/101‑1 (MQ=18)
tttttctttCG.GGGGGGGGGGGGGGTGAACCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTc < 2:2186733/99‑1 (MQ=17)
tttgcggtC.GGGGGGGAGGGGGGCGAAGCCNCCGGCG..GG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGc < 1:2459183/94‑1 (MQ=17)
ttttgC.GGGGGGGCGGGGGGTGACCCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCttt < 2:1353154/100‑1 (MQ=18)
ttttCGGGGGGGGCGGGGGGTAAAACCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCttt < 1:806752/101‑1 (MQ=18)
tttG.GGGGGGGGGGGGGGTGAAGCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTcc < 1:744353/101‑1 (MQ=18)
tttC.GGGGGGGGGGGGGGTGAAGCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTcc < 1:2322561/101‑1 (MQ=21)
tggggggggGGGGGGGTGCACCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCt < 2:2424321/99‑1 (MQ=18)
gggggggGGGGGGGTGAAGCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCttt < 2:3314660/101‑1 (MQ=21)
gggggggCGGGGGGTGAAGCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCttt < 2:696480/101‑1 (MQ=21)
ggggggGGGGGGGTGAAGCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTc < 2:384356/101‑1 (MQ=21)
gggggCGGGGGGTGAACCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCg < 1:1676318/101‑1 (MQ=21)
gCGGGGGGTGAAGCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGccc < 1:4199792/101‑1 (MQ=21)
ggggggTGAAGCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGGGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCCGCCCgg > 1:1217163/1‑101 (MQ=18)
ggggggTGAAGCCCCC..CGCGGG...G...CG.CCTCGGGCTTGCCCGAGGGGAAAGCTTCCCCCCCTGAAAACCTTGCCTGCGCGCGGCGCTTTCCCTTTTGGccccc > 1:4268330/1‑99 (MQ=18)
gggggTGAAGCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGGAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGGCGCCTTCCCTTTCGGCCCCgc > 2:2069423/1‑101 (MQ=18)
gggggTGAAGCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGgc > 1:1100806/1‑101 (MQ=21)
|
TCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTC.GGGGGGGCGGGGGGTGAAGCCCCC..C...GT...C...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCCGGC > NC_014034/1732788‑1732948
Base quality scores:
ATCG
< 3 ≤
ATCG
< 7 ≤
ATCG
< 19 ≤
ATCG
< 32 ≤
ATCG
< 40 ≤
ATCG
|