Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_014034 2,494,003 A→G 2.8% intergenic (+51/‑191) RCAP_rcc02319 → / → RCAP_rcc02320 hypothetical protein/hypothetical protein

Read alignment evidence...
  seq id position change freq score reads annotation genes product
*NC_0140342,494,0030A→G 2.8% 4.1 ‑2.5 ‑0.7176intergenic (+51/‑191)RCAP_rcc02319/RCAP_rcc02320hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  new base (4/1):  ref base (65/105):  total (70/106)
Fisher's exact test strand distribution p-value = 7.97e-02
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 2.21e-01

Only 100 of 198 total aligned reads displayed.

GCGTCTGGCCCAGCGCCGCGGCGGGCGCGCGGCACGACAGGCCGAGTA.A.GGGGGGG.CG..CTGCCCCCGTTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.AGCAGAAGGGGGGCAAGCG.CC.CCCTGCCCCGGCGGTCCGT  >  NC_014034/2493904‑2494101
                                                                                                        |                                                                                                        
  gTCTGGCCCAGCGCCGCGGCGGGCGCGCGGCACGACAGGCCGAGTA.AGGGGGGGG.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTgcagc                                                                                                        <  1:494049/101‑1 (MQ=25)
   tCTGGCCCAGCGCCGCGGCGGGCGCGCGGCACGACAGGCCGAGTA.AGGGGGGGG.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTgcagca                                                                                                       <  2:1452183/101‑1 (MQ=25)
   tCTGGCCCAGCGCCGCGGCGGGCGCGCGGCACGACAGGCCGAGTA.AGGGGGGGG.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTgcagca                                                                                                       >  2:2366683/1‑101 (MQ=25)
   tCTGGCCCAGCGCCGCGGCGGGCGCGCGGCACGACAGGCCGAGTA.AGGGGGGGG.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGAGATTTgcagca                                                                                                       >  1:3007266/1‑101 (MQ=25)
    cTGGCCCAGCGCCGCGGCGGGCGCGCGGCACGACAGGCCGAGTA.AGGGGGGGG.CG..CTGCCCCCTCGCTCCCAGCGGGCTCCCCCCCGGGCATTTGCCGCaa                                                                                                      >  1:4312389/1‑101 (MQ=255)
    cTGGCCCAGCGCCGCGGCGGGCGCGCGGCACGACAGGCCGAGTA.AGGGGGGGG.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCaa                                                                                                      <  1:1215081/101‑1 (MQ=25)
     tGGCCCAGCGCCGCGGCGGGCGCGCGGCACGACAGGCCGAGTA.AGGGGGGGG.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAg                                                                                                     <  1:2466538/101‑1 (MQ=21)
     tGGCCCAGCGCCGCGGCGGGCGCGCGGCACGACAGGCCGAGTA.AGGGGGGGG.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAg                                                                                                     <  1:1662931/101‑1 (MQ=21)
      ggCCCAGCGCCGCGGCGGGCGCGCGGCACGACAGGCCGAGTA.AGGGGGGGG.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGa                                                                                                    >  2:3761066/1‑101 (MQ=21)
         ccAGCGCCGCGGCGGGCGCGCGGCACGACAGGCCGAGTA.AGGGGGGGG.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGa                                                                                                 <  2:427891/101‑1 (MQ=21)
         ccAGCGCCGCGGCGGGCGCGCGGCACGACAGGCCGAGTA.AGGGGGGGG.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGa                                                                                                 <  1:4437683/101‑1 (MQ=21)
         ccAGCGCCGCGGCGGGCGCGCGGCACGACAGGCCGAGTA.AGGGGGGGG.CG..CTCCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGa                                                                                                 <  1:1124394/101‑1 (MQ=21)
          cAGCGCCGGGGCGGGCGCGCGGCACGACAGGCCGAGTA.AGGGGGGGG.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGaa                                                                                                <  2:2600911/101‑1 (MQ=18)
          cAGCGCCGCGGCGGGCGCGCGGCACGACAGGCCGAGTA.AGGGGGGGG.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGaa                                                                                                <  2:3880396/101‑1 (MQ=21)
           aGCGCCGCGGCGGGCGCGCGGCACGACAGGCCGAGTA.AGGGGGGGG.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGaaa                                                                                               <  1:2439063/101‑1 (MQ=21)
            gcgcCGCGGCGGGCGCGCGGCACGACAGGCCGAGTA.AGGGGGGGG.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAAc                                                                                              >  1:2642156/1‑101 (MQ=21)
             cgccgcGGCGGGCGCGCGGCACGACAGGCCGAGTA.AGGGGGGGG.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAAcc                                                                                             >  2:2541273/1‑101 (MQ=21)
             cgccgcGGCGGGCGCGCGGCACGACAGGCCGAGTA.AGGGGGGGG.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAAcc                                                                                             >  1:1958933/1‑101 (MQ=21)
              gccgcGGCGGGCGCGCGGCACGACAGGCCGAGTA.AGGGGGGGG.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCg                                                                                            <  1:4489113/101‑1 (MQ=21)
              gccgcGGCGGGCGCGCGGCACGACAGGCCGAGTA.AGGGGGGGG.CG..CTGCCCCCCGGCCGCAAGCGGGCCCCCCCCCGGGGATTTTCCGCCAGAAGaaaaag                                                                                            >  1:3452938/1‑98 (MQ=16)
               ccgcGGCGGGCGCGCGGCACGACAGGCCGAGTA.AGGGGGGGG.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCgg                                                                                           <  1:3951055/101‑1 (MQ=21)
                 gcggcgGGCGCGCGGCACGACAGGCCGAGGA.A.GGGGGGG.GGGCCGGCCCCCCGCCCCCAACGGGACCCCCCCCCGGCGATTTCCACCAAAATAAAAACGGa                                                                                          >  1:902978/1‑101 (MQ=255)
                   ggcgggcgCGCGGCACGACAGGCCGAGTA.AGGGGGGGG.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGc                                                                                       >  1:3372577/1‑101 (MQ=21)
                      gggcgGGCGGCACGACAGGCCGAGTA.AGGGGGGGG.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCtt                                                                                    <  1:2839980/101‑1 (MQ=18)
                      gggcgCGCGGCACGACAGGCCGAGGG.A.GGGGGGGACG..GTGCCCCCCGTCCGCAAGCGGCCTCTCACCCGGTTTTTGGCAGCGAGAGGGAACCTGAttgcct                                                                                    >  2:162605/1‑96 (MQ=9)
                       ggcgCGCGGCACGACAGGCCGAGTA.AGGGGGGGG.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCttt                                                                                   <  2:3009561/101‑1 (MQ=21)
                       ggcgCGCGGCACGACAGGCCGAGTA.AGGGGGGGG.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCttt                                                                                   <  2:1945107/101‑1 (MQ=21)
                        gcgcgcGGCACGACAGGCCGAGTA.AGGGGGGGG.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTc                                                                                  <  1:4292234/101‑1 (MQ=21)
                        gcgcgcGGCACGACAGGCCGAGTA.AGGGGGGGG.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTc                                                                                  <  2:151780/101‑1 (MQ=21)
                         cgcgcgGCACGACAGGCCGAGTA.AGGGGGGGG.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCa                                                                                 <  2:1562765/101‑1 (MQ=21)
                          gcgcgGCACGACAGGCCGAGTA.AGGGGGGGG.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCAt                                                                                <  2:1815855/101‑1 (MQ=21)
                             cgGCACGACAGGCCGAGTAGG.GGGGGGG.CG..CTCCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCtt                                                                             <  2:4827556/101‑1 (MQ=18)
                             cgGCACGACAGGCCGAGTA.AGGGGGGGG.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGCTATTTGCAGCAAGATGAAACCGGATGCCTTTCATCtt                                                                             >  2:3262291/1‑101 (MQ=21)
                             cagCACGACAGGCCGAGTA.AGGGGGGGG.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCtt                                                                             <  2:5014979/99‑1 (MQ=18)
                              ggCACGACAGGCCGAGTA.AGGGGGGGG.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTg                                                                            <  1:1745292/101‑1 (MQ=21)
                               gCACGACAGGCCGAGTA.AGGGGGGGG.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGc                                                                           >  2:4969158/1‑101 (MQ=21)
                                 aCGACAGGCCGAGTA.AGGGGGGGG.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGccc                                                                         <  1:4140015/101‑1 (MQ=21)
                                 aCGACAGGCCGAGTA.AGGGGGGGG.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGccc                                                                         >  1:2294179/1‑101 (MQ=21)
                                 aCGACAGGCCGAGTA.AGGGGGGGG.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGccc                                                                         <  1:1085005/101‑1 (MQ=21)
                                  cGACAGGCCGAGTA.AGGGGGGGG.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCg                                                                        <  1:1801820/101‑1 (MQ=21)
                                    aCAGGCCGAGTA.AGGGGGGGG.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGGTATTTGCAGCAAGATGAAAACGGATGCCTTTCATCTTTCCCGaa                                                                      >  1:3904886/1‑101 (MQ=18)
                                     cAGGCCGAGTA.AGGGGGGGG.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGaaa                                                                     <  1:577467/101‑1 (MQ=21)
                                      aGGCCGAGTA.AGGGGGGGG.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAat                                                                    <  1:1911015/101‑1 (MQ=21)
                                      aGGCCGAGTA.AGGGGGGGG.CC..CTTCCCCCCCTCCGCAAGGGGGCCCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAat                                                                    <  2:3696304/101‑1 (MQ=21)
                                       ggCCGAGTA.AGGGGGGGG.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAata                                                                   <  2:582101/101‑1 (MQ=21)
                                       ggCCGAGTA.AGGGGGGGG.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAata                                                                   <  1:739234/101‑1 (MQ=21)
                                        gCCGAGTA.AGGGGGGGG.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAatat                                                                  <  2:1716759/101‑1 (MQ=21)
                                        gCCGAGTA.AGGGGGGGG.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAatat                                                                  <  1:3600293/101‑1 (MQ=18)
                                          cGAGTA.AGGGGGGGG.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATcc                                                                <  2:2103101/101‑1 (MQ=18)
                                          cGAGTA.AGGGGGGGG.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATcc                                                                <  2:3591959/101‑1 (MQ=21)
                                           taGTA.AGGGGGGGG.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATccc                                                               <  2:2443922/100‑1 (MQ=18)
                                            aGTA.AGGGGGGGG.CG..CTGACCCCAGTCCGCAAGCGGACTTCCCCCGTTATATTTGCAGCAAGATGAAACCGGATTGCTTTCATATTGCCCGAAATATCCCg                                                              >  2:826774/1‑101 (MQ=18)
                                              gtaagggggggg.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCgg                                                             >  2:50858/6‑101 (MQ=255)
                                               taagggggggg.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCCAGATGAAACCGGGTGCCTTTCATCTTGCCCGAAATATTCCggg                                                            >  2:1893391/5‑101 (MQ=18)
                                               taagggggggg.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCggg                                                            >  1:3848389/5‑101 (MQ=255)
                                               taagggggggg.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCCAAAAATCCCgcg                                                            >  2:3525894/5‑99 (MQ=18)
                                                aagggggggg.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCgggg                                                           >  1:3722445/4‑101 (MQ=255)
                                                 agggggggg.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCCGCAAGATGAAACCCGATGCCTTTCATCTTGCCCGAACTATCCCggggg                                                          >  2:1216163/3‑101 (MQ=18)
                                                 agggggggg.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCggggg                                                          >  2:4782252/3‑101 (MQ=255)
                                                     ggggg.CG..CTGCCCCCCGTGCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATCAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGa                                                      <  1:5026068/101‑1 (MQ=18)
                                                     ggggg.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGa                                                      <  2:560147/101‑1 (MQ=255)
                                                       ggg.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.t                                                   <  1:2724890/101‑1 (MQ=255)
                                                       ggg.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.t                                                   <  1:231201/101‑1 (MQ=255)
                                                        gg.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.Tg                                                  <  1:2366847/101‑1 (MQ=255)
                                                        gg.CG..CTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.Tg                                                  <  2:4312072/101‑1 (MQ=255)
                                                           cg..cTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGc                                                <  1:4217268/101‑1 (MQ=255)
                                                            g..cTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..g                                             >  2:2348482/1‑101 (MQ=255)
                                                            g..cTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..g                                             >  1:944133/1‑101 (MQ=255)
                                                              ccTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..g                                             <  1:1388401/100‑1 (MQ=255)
                                                                tGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aa                                          >  1:2942809/1‑100 (MQ=255)
                                                                 ccccccCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aag                                         <  2:295632/100‑3 (MQ=255)
                                                                  cccccG.TCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagcc                                       <  1:2236576/101‑5 (MQ=255)
                                                                  cccccCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagc                                        <  1:779015/101‑4 (MQ=255)
                                                                     cccgtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAAAATCCCGGGGGGTGAA.TGGC..G.aagccag                                     >  1:2081755/5‑95 (MQ=21)
                                                                        gtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGCAATATCCCGGGGGGCGAA.TGGC..G.aagccagagg                                  >  2:4054418/2‑92 (MQ=18)
                                                                        gtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagccagagg                                  <  2:4234184/100‑10 (MQ=255)
                                                                        gtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagccagagg                                  >  2:4627169/2‑92 (MQ=255)
                                                                              aaGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGCa                             >  2:2286492/1‑101 (MQ=18)
                                                                               aGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGCag                            >  2:2861193/1‑100 (MQ=18)
                                                                                gCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGCagc                           <  2:2245006/101‑3 (MQ=18)
                                                                                  ggACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGCagcgc                         >  1:4922635/1‑97 (MQ=17)
                                                                                  ggACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGCagcgc                         >  1:4959002/1‑97 (MQ=17)
                                                                                   gACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCG.cc                      >  1:2912258/1‑101 (MQ=18)
                                                                                    aCTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCG.cc.c                    >  2:380330/1‑101 (MQ=18)
                                                                                     cTCCCCCCGGGATATTTGCAGCAAGTTGAAACCGGATGCCCTTCATCTTGCCCGAAATATCCCGGGGGGTGAG.TCGC..GAAGCCACAGGGGGGC.AGCG.cc.cc                   >  2:1792817/1‑101 (MQ=17)
                                                                                      tCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCG.cc.ccc                  >  2:3924517/1‑101 (MQ=17)
                                                                                            cGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCCTCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCCC.CCCTGccc             >  1:1996975/1‑101 (MQ=17)
                                                                                              ggATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCCC.CCCTGCCCcg           >  1:4557965/1‑101 (MQ=17)
                                                                                               gATATTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.AGGCCAAGAGGGGGCAGCG.CC.CCCTGCCCcgc          >  1:1106325/1‑100 (MQ=2)
                                                                                               gATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.AAGCCAGAGGGGGCCAGCGCCC.CCCTGCCCcgg          >  1:1500262/1‑101 (MQ=18)
                                                                                                atatTTGCAGGAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.GGGC..GAAGCCAGAGGGGGGCCGGGC.CC.CCCTGCCCcgcc         >  1:1654281/1‑99 (MQ=17)
                                                                                                atatTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGCGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCCC.CCCTGCCCcggc         >  1:1947906/1‑101 (MQ=17)
                                                                                                 tatTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCCC.CCCTGCCCcggcg        >  2:4221845/1‑101 (MQ=18)
                                                                                                     tGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCCC.CCCTGCCCCGGCGGTcc    >  1:3887436/1‑101 (MQ=17)
                                                                                                     tGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCCC.CCCTGCCCCGGCGGTcc    >  1:3037526/1‑101 (MQ=17)
                                                                                                     tGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCCC.CCCTGCCCCGGCGGGcc    >  1:3779656/1‑101 (MQ=17)
                                                                                                     tGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGG.GAGCG.CCGCCCTGCCCCGGCGGTcc    >  2:1902392/1‑101 (MQ=18)
                                                                                                      gcagcaAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCCC.CCCTGCCCCGGCGGTCCg   <  1:3262542/101‑1 (MQ=17)
                                                                                                      gcagcaAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCCC.CCCTGCCCCGGCGGTCCg   <  1:67356/101‑1 (MQ=17)
                                                                                                       cagcaAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGC.AGCGCCC.CCCTGCCCcggcggggcgt  >  2:4463382/1‑96 (MQ=17)
                                                                                                        |                                                                                                        
GCGTCTGGCCCAGCGCCGCGGCGGGCGCGCGGCACGACAGGCCGAGTA.A.GGGGGGG.CG..CTGCCCCCGTTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.AGCAGAAGGGGGGCAAGCG.CC.CCCTGCCCCGGCGGTCCGT  >  NC_014034/2493904‑2494101

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG