| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 2,494,048 | G→A | 3.2% | intergenic (+96/‑146) | RCAP_rcc02319 → / → RCAP_rcc02320 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 2,494,048 | 0 | G→A | 3.2% | 5.7 ‑0.4 ‑1.1 | 157 | intergenic (+96/‑146) | RCAP_rcc02319/RCAP_rcc02320 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (4/1): ref base (87/63): total (93/64) | ||||||||||
| Fisher's exact test strand distribution p-value = 6.49e-01 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 7.30e-02 | ||||||||||
Only 100 of 176 total aligned reads displayed.
AGTAAGGGGGGGCGCTGCCCCCGTTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.AG.CAGAAGGGGGGCAAGCG.C.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCA > NC_014034/2493948‑2494147
|
gtaaggggggggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCgg > 1:551448/6‑101 (MQ=255)
gtaaggggggggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCgg > 2:50858/6‑101 (MQ=255)
taaggggggggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCCAGATGAAACCGGGTGCCTTTCATCTTGCCCGAAATATTCCggg > 2:1893391/5‑101 (MQ=18)
taaggagggggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCCAGATGAAACCGGGTGCCTTTCATCTTGCCCGAAATATCCCggg > 1:333415/7‑101 (MQ=17)
aaggggggggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCgggg > 1:3722445/4‑101 (MQ=255)
aaggggggggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCgggg < 1:2046447/98‑1 (MQ=255)
aggggggggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCggggg > 1:4942366/3‑101 (MQ=255)
aggggggggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCggggg > 2:4782252/3‑101 (MQ=255)
gggggCGCTGCCCCCCGTGCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATCAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGa < 1:5026068/101‑1 (MQ=18)
gggggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGa < 2:560147/101‑1 (MQ=255)
ggggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATTCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGaa < 2:1670615/101‑1 (MQ=255)
gggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.t < 1:231201/101‑1 (MQ=255)
gggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.t < 1:2724890/101‑1 (MQ=255)
gggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCCGGCTATTTGCAGCAAGATGAAACCGGAAGCATTTCCTCTTTCCCGAAAAATCCCggggggggcat > 1:1162576/1‑96 (MQ=17)
ggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.Tg < 1:2366847/101‑1 (MQ=255)
gcTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..g > 2:2348482/1‑101 (MQ=255)
ccTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..g < 1:1388401/100‑1 (MQ=255)
ccccccCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aag < 2:295632/100‑3 (MQ=255)
cccccG.TCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagcc < 1:2236576/101‑5 (MQ=255)
cccccG.TCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagcc < 2:1958789/101‑5 (MQ=255)
cccccCGTCCGCAAGCGGCCTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagc < 2:3354399/101‑4 (MQ=21)
cccccCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagc < 1:779015/101‑4 (MQ=255)
cccgtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAAAATCCCGGGGGGTGAA.TGGC..G.aagccag > 1:2081755/5‑95 (MQ=21)
gtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagccagagg < 2:4234184/100‑10 (MQ=255)
gtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagccagagg > 2:4627169/2‑92 (MQ=255)
tCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagccagaggg < 1:1113887/101‑11 (MQ=255)
aaGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGCa > 2:2286492/1‑101 (MQ=18)
gCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGCagc < 2:2245006/101‑3 (MQ=18)
cGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGATATATCCCGGGGGGCGAA.TGGC..GAAG.CCAGAGGGGGGCagcg > 2:5013465/1‑98 (MQ=17)
cGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGCagcg > 2:234936/1‑98 (MQ=18)
ggACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGTGGGGGGAA.TGGC..GAAG.CCAGAGGGGGGCagcgc > 1:4296424/1‑97 (MQ=17)
ggACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGCagcgc > 1:4922635/1‑97 (MQ=17)
ggACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGCagcgc > 1:4959002/1‑97 (MQ=17)
gACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.c.c > 1:1658484/1‑101 (MQ=17)
gACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.c.c > 1:2912258/1‑101 (MQ=18)
aCTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.c.c.c > 2:380330/1‑101 (MQ=18)
cTCCCCCCGGGATATTTGCAGCAAGTTGAAACCGGATGCCCTTCATCTTGCCCGAAATATCCCGGGGGGTGAG.TCGC..GAAG.CCACAGGGGGGC.AGCG.c.c.cc > 2:1792817/1‑101 (MQ=17)
tCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.c.c.ccc > 2:3924517/1‑101 (MQ=17)
cccccGGAATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCGGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.c.c.cccct < 2:4240711/101‑3 (MQ=17)
cGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCCTCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGccc > 1:1996975/1‑101 (MQ=17)
gggATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGcccc > 2:3722405/1‑101 (MQ=17)
ggATATTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.C.C.CCCTGCCCcg > 1:414303/1‑101 (MQ=2)
ggATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCcg < 1:1580824/101‑1 (MQ=17)
ggATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCcg > 1:4557965/1‑101 (MQ=17)
gATATTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.C.C.CCCTGCCCcgc > 1:1106325/1‑100 (MQ=2)
gATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.AA.GCCAGAGGGGGCCAGCGCC.C.CCCTGCCCcgg > 1:1500262/1‑101 (MQ=18)
atatTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.C.C.CCCTGCCCcgcc < 2:2567939/101‑3 (MQ=2)
atatTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGCGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCcggc > 1:1947906/1‑101 (MQ=17)
tatTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCcggcg > 1:2956470/1‑101 (MQ=17)
tatTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCcggcg > 2:4221845/1‑101 (MQ=18)
ttGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTc > 1:3754824/1‑101 (MQ=18)
tGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTcc > 1:3887436/1‑101 (MQ=17)
tGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTcc > 1:3037526/1‑101 (MQ=17)
tGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGG.GAGCG.C.CGCCCTGCCCCGGCGGTcc > 2:1902392/1‑101 (MQ=18)
tGCACNNAGATGCAACCGGATTCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTcc < 1:1976333/101‑1 (MQ=14)
cagcaAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCcggcggggcgt > 2:4463382/1‑96 (MQ=17)
gcaAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGGGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTgg > 1:4272173/1‑101 (MQ=17)
aGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGGGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCCGCGGTCCGTggcgg > 2:3144664/1‑101 (MQ=17)
gATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTggcggc > 1:991197/1‑101 (MQ=17)
aaaCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCt > 2:29184/1‑101 (MQ=17)
aaCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCtt < 2:2912032/101‑1 (MQ=17)
aCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTg > 2:3661741/1‑101 (MQ=18)
aCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTg < 2:3904594/101‑1 (MQ=17)
ccGGATGCCTTTCATCTTCCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGa < 2:1609947/101‑1 (MQ=17)
ggATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcg < 2:3017367/101‑1 (MQ=17)
gATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGAGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCA.CAC.CCCTGCCCCGGCGGTCCGTGGCGGGGCCCTGAcgg > 1:836473/1‑101 (MQ=12)
tGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcgggc < 1:740217/101‑1 (MQ=17)
tGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGT.GCGGCGCCTTGAcgggcg > 2:218413/1‑101 (MQ=17)
cTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcgggcggg > 2:416665/1‑101 (MQ=18)
tttCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCgggg > 2:1200603/1‑101 (MQ=18)
ttCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCggggg > 2:3039833/1‑101 (MQ=18)
ttCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCggggg > 2:76190/1‑101 (MQ=18)
ttCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGG.AAGCGCC.C.CCCTGCCCCGGCGGGCCGCGGCGGCGCCTTGCGGGGCggggg > 2:1531078/1‑101 (MQ=9)
ttCATCTTGCCCGAAATATCCCGGGGGGTGAA.CGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCggggg > 2:1903303/1‑101 (MQ=18)
tCATCTTGCCCGAAATATCCCGGGGGGCGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTCCCCCGGCGGTCCGTGGCGGCGCCTTGACCGGGgggggg > 2:1239428/1‑100 (MQ=9)
aTCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGgcgc > 2:3072130/1‑101 (MQ=18)
tCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGcgcg > 2:364132/1‑101 (MQ=18)
cTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCgg < 2:4405102/101‑1 (MQ=18)
tGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGGCTTGACGGGCGGGGGCGCGGGc > 2:4999236/1‑101 (MQ=18)
tGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGc < 1:3325569/101‑1 (MQ=18)
tGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGc < 1:380383/101‑1 (MQ=18)
gCCCGAAATATCCCGGGGGGTGAA.TGGC..G.AA.GCCAGAGGGGGCCAGCGCC.C.CCCTCCCCCGGCGGTCCGTGGCGGCGCCTTCACCTGGGGGGGCGCggggc > 2:621723/1‑99 (MQ=9)
gccGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCAt > 2:2132524/2‑101 (MQ=18)
cccGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCAt < 1:2606143/101‑1 (MQ=18)
ccGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCAtt < 1:2861406/101‑1 (MQ=18)
ccGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCAtt < 1:2961129/101‑1 (MQ=18)
ccGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCAtt > 2:2835915/1‑101 (MQ=18)
gAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTaa < 1:2443983/101‑1 (MQ=18)
aaaTATCCCGTGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGGGCGGGCATTAAc > 1:3450778/1‑101 (MQ=18)
aaaTATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGGCGGGCGGGGGCGCGGGCATTAAc < 2:1701948/101‑1 (MQ=18)
aaaTATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAAc > 1:3127500/1‑101 (MQ=18)
aaaTATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAAc > 2:2218909/1‑101 (MQ=18)
aaaTATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCCCGGGGATTAAc > 2:1249508/1‑101 (MQ=18)
atatCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCg > 2:4307076/1‑101 (MQ=21)
tatCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGa > 1:4144164/1‑101 (MQ=21)
atCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGG.AGCCC.C.C.CCCTGCCCCGGCGGGCCGGTGGGGCGCCTTGGCCGGGGGGGGGGGGGGGATTTACCCaaa > 1:3547767/1‑101 (MQ=2)
agcccGGGGGGGGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGaa < 1:305762/99‑1 (MQ=21)
tCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGaaa < 1:4718866/101‑1 (MQ=21)
ggggggTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGc < 1:4782575/101‑1 (MQ=25)
gggggTGAA.TGGC..GAAGCCAG.AGGGGGGC.AGCGCC.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCa > 2:3177538/1‑101 (MQ=25)
|
AGTAAGGGGGGGCGCTGCCCCCGTTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.AG.CAGAAGGGGGGCAAGCG.C.C.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCA > NC_014034/2493948‑2494147
Base quality scores:
ATCG
< 3 ≤
ATCG
< 15 ≤
ATCG
< 24 ≤
ATCG
< 32 ≤
ATCG
< 40 ≤
ATCG
|