| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 3,068,163 | A→T | 2.9% | intergenic (‑146/+146) | glcD ← / ← RCAP_rcc02872 | glycolate dehydrogenase, subunit GlcD/hypothetical protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 3,068,163 | 0 | A→T | 2.9% | 4.1 ‑0.6 ‑0.2 | 140 | intergenic (‑146/+146) | glcD/RCAP_rcc02872 | glycolate dehydrogenase, subunit GlcD/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (4/0): ref base (97/38): total (101/39) | ||||||||||
| Fisher's exact test strand distribution p-value = 5.75e-01 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 6.11e-01 | ||||||||||
Only 100 of 197 total aligned reads displayed.
ATTCGCGCAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAGCGCCCGCCCCGCCCATGGCGGGCG.CTTCT.CGCCCGCCGGGGCGGGCGCCGGCCTC.TGCTGCGCCT.GGGGAAACGGTCTTGGCACCGCCCGGGCTCCGG > NC_014034/3068063‑3068262
|
aTTCGCGCAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCa < 1:1429739/101‑1 (MQ=255)
tCGCGCAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAgc < 2:4160680/101‑1 (MQ=255)
tCGCGCAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAgc > 2:3665169/1‑101 (MQ=255)
cgcgCAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAgcg > 1:438136/1‑101 (MQ=255)
cgcgCAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAgcg > 2:791169/1‑101 (MQ=255)
gcgcAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAgcgc > 2:1942028/1‑101 (MQ=255)
cgcAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAGcgcc > 1:3129191/1‑101 (MQ=255)
cAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAGcgcccg > 1:111968/1‑101 (MQ=255)
ccGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAGCgcccgccc > 1:4057091/1‑101 (MQ=255)
cGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGGGGTCATGCGGAACAGTGGCCTCGGGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAGCGcccgcccc < 2:845270/101‑1 (MQ=255)
cGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAGCGcccgcccc > 2:3799549/1‑101 (MQ=255)
cGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAGCGcccgcccc > 2:3826837/1‑101 (MQ=255)
cGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAGCGcccgcccc < 2:4569466/101‑1 (MQ=255)
gAAACGATGGGCAGGCTGACAGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACAGCCGAGGG.CCCAAA.GGCC.CT.CGGCCACGGcaccccccg > 2:1660352/1‑101 (MQ=21)
aaaCGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAGCGcccgccccgc > 1:1807698/1‑101 (MQ=255)
aaCGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGCGGCCTCGTGACCGCCGAGGG.CCCAAA.GTCC.CT.TGGCCAGCTCcccccccccc > 1:802132/1‑101 (MQ=21)
aCGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAGCGCCcgccccgccc < 1:2912370/101‑1 (MQ=255)
aCGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAGCGCCcgccccgccc > 2:4089727/1‑101 (MQ=255)
aCGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAGCGCCcgccccgccc < 1:599410/101‑1 (MQ=255)
gATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAGCGCCCGCCCCGCCCAt < 2:2979522/101‑1 (MQ=255)
gATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAGCGCCCGCCCCGCCCAt < 2:3509030/101‑1 (MQ=255)
gATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAGCGCCCGCCCCGCCCAt < 2:3379692/101‑1 (MQ=255)
aTGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAGCGCCCGCCCCGCCCATg > 2:1822147/1‑101 (MQ=255)
tGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAGCGCCCGCCCCGCCCCTgg > 2:3717739/1‑101 (MQ=255)
gggCAGGCTGACCGAGGCCATCGCCGAGGTCATGGGGAACAGTGGCCTCGTGCCCGCCGAGGG.CCCAAA.GGGC.CT.CGGCCGTCGCCCGCCCCGCCCAAggc > 1:2837124/1‑101 (MQ=18)
gggCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAGCGCCCGCCCCGCCCATggc > 2:2377115/1‑101 (MQ=255)
gCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAGCGCCCGCCCCGCCCATggcgg < 2:1533148/101‑1 (MQ=255)
cAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAGCGCCCGCCCCGCCCATggcggg < 2:3281764/101‑1 (MQ=255)
cTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAGCGCCCGCCCCGCCCCCCGCGGGCG.Ct > 1:974491/1‑101 (MQ=255)
gACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAGCGCCCGCCCCGCCCCTGGCGGGGG.CCtc > 1:2111807/1‑101 (MQ=255)
gACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAGCGCCCGCCCCGCCCATGGCGGGGG.CCtc > 2:3781759/1‑101 (MQ=255)
gACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAGCGCCCGCCCCGCCCATGGCGGGCG.CTtc > 2:2015182/1‑101 (MQ=255)
gACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAGCGCCCGCCCCGCCCATGGCGGGCG.CTtc > 1:4813241/1‑101 (MQ=255)
cGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAGCGCCCGCCCCGCCCATGGCGGGCG.CTTCT.cg > 2:3777837/1‑101 (MQ=255)
cGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAGCGCCCGCCCCGCCCATGGCGGGCG.CCtcccc > 2:697190/1‑98 (MQ=255)
ggCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAGCGCCCGCCCCGCCCATGGCGGGGG.GCTCT.ccccc > 1:1730512/1‑101 (MQ=18)
gCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAGCGCCCGCCCCGCCCATGGCGGGCG.CCTCT.cgcccc > 1:2396462/1‑100 (MQ=255)
aTCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAGCGCCCGCCCCGCCCATGGCGGGCG.CTTCT.CGCcccccg > 2:969385/1‑101 (MQ=255)
aTCGCCGAGGCCATGCGGACCAGGGGCCTCGTGCCCGCCGAGGG.CCAAAA.GCCC.CT.CGGCCAGCGCCCGCCCCGCCCATGGCGGGCG.CTTCT.CGCccgccg < 1:2577653/101‑1 (MQ=17)
gCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAGCGCCCGCCCCGCCCATGGCGGGCG.CTTCT.CGCCCGCCgggg > 2:3321377/1‑101 (MQ=255)
cGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAGCGCCCGCCCCGCCCATGGCGGGCG.CTTCT.CGCCCGCCGgggcg < 1:4484842/101‑1 (MQ=255)
cGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAGCGCCCGCCCCGCCCATGGCGGGCG.CTTCT.CGCCCCCCCgggcg > 2:3983163/1‑101 (MQ=255)
gAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAGCGCCCGCCCCGCCCATGGCGGGCG.CTTCT.CGCCCGCCCgggcgg > 2:2880350/1‑101 (MQ=255)
aGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAGCGCCCGCCCCGCCCATGGCGGGCG.CTTCT.CGCCCGCCGgggcggg > 1:292373/1‑101 (MQ=255)
aGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAGCGCCCGCCCCGCCCATGGCGGGCG.CTTCT.CCCCCGCCGgggcggg > 1:3359564/1‑101 (MQ=255)
ggTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCGGCGCCCGCCCCGCCCATGGCGGGCG.CTTCT.CGCCCGCCGgggcgggc < 1:2702887/101‑1 (MQ=255)
tCATGCGGAACAGTGGCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAGCGCCCGCCCCGCCCATGGCGGGCG.CTTCT.CGCCCGCCGGGGCGGgcgc < 2:650604/101‑1 (MQ=255)
caggCGGAACAGTGCCCTCGTGCCCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAGCGCCCGCCCCGCCCATGGCGGGCG.CTTCT.CGCCCGCCGGGGCGGGCGcc < 1:3890401/98‑1 (MQ=255)
cATGCGGAACAGTGGCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAGCGCCCGCCCCGCCCATGGCGGGCG.CTTCT.CGCCCGCCGGGGCGGGCGcc < 1:2541991/101‑1 (MQ=255)
aTGCGGAACAGTGGCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAGCGCCCGCCCCGCCCATGGCGGGCG.CTTCT.CGCCCGCCGGGGCGGGCGCCg < 1:3596719/101‑1 (MQ=255)
gCGGAACAGTGGCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAGCGCCCGCCCCGCCCATGGCGGGCG.CTTCT.CGCCCCCCGGGGGGGGCGCCGGc > 2:141664/1‑101 (MQ=255)
cgaaaCAGTGGTCCCATGACCCCCGAGTG.CCCCAA.GGCA.CT.CGGGCAGCGCCCGCCCCGCCCATGGCGGGNG.CTTCTCCCCCCCCCGgggcggggggggcc > 1:614929/4‑94 (MQ=18)
accAGTGGCCTGGTGCCCGCGGGGGG.CCAAAG.GCCC.CG.CGGCCGGCGCCCGCCCCGCCCAGGGCGGGGG.CTTCT.CGCCCGCCGGGGCGGGCGCCGGCctc.t < 2:3267444/99‑1 (MQ=11)
acgggggCCTCGGGCCCGCGGAGGC.CCCAAG.GCCC.CT.CGGCCGGCGCCCGCCCCGCCCATGGCGGGCG.CTTCT.CGCCCGCCGGGGCGGGCGCCGGCCTc.tg < 1:2173345/96‑1 (MQ=11)
gggggCCCCGTGCCCGCCGAGGC.CCCAAG.GGCC.CT.CGGCCAGCCCCCGCCCCGCCCATGGCGGGCG.CTTCT.CGCCCGCCGGGGCGGGCGCCGGCCTc.tgct < 2:248228/98‑1 (MQ=14)
aGTGGCCTGGGGACCGCCG.GGG.CCCAAACGGCC.GC.CGGCCTGCCCCCGCCCCGCCCATGGCGGGCG.CTTGT.CGCCCGCCGGGGCGGGCGCCGGCCTc.tgct < 1:3226826/101‑1 (MQ=11)
aGTGGCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAGCGCCCGCCCCGCCCATGGCGGGCG.CTTCT.CGCCCGCCGGGGCGGGGGCCGGCCTc.tgcc > 2:3676811/1‑100 (MQ=255)
tGGCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAGCGCCCGCCCCGCCCATGGCGGGCG.CTTCT.CGCCCGCCGGGGCGGGCGCCGGCCCC.tgctgc > 2:4821916/1‑101 (MQ=255)
tGGCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAGCGCCCGCCCCGCCCATGGCGGGCG.CTTCT.CGCCCCCCGGGGCCGGGGCCCGCCCC.tgctgc > 1:4914630/1‑101 (MQ=14)
ggCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAGCGCCCGCCCCGCCCATGGCGGGCG.CTTCT.CGCCCGCCGGGGCGGGCGCCGGCCCC.CGCTgcg > 1:3897088/1‑101 (MQ=255)
gCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAGCGCCCGCCCCGCCCATGGCGGGCG.CTTCT.CGCCCCCCGGGGCGGGGGCCGGCCCC.TGCTgcgc > 1:1779717/1‑101 (MQ=255)
ccTCGTGACCGCGGAGGG.CCCAAG.GGCC.CT.CGGCCAGCGCCCGCCCCGCCCATGGCGGGCG.CTTCT.CGCCCGCCGGGGCGGGCGCCGGCCTC.TGCTGCGcc < 2:3087477/101‑1 (MQ=255)
tCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAGCGCCCGCCCCGCCCATGGCGGGCG.CTTCT.CGCCCGCCCGGGCGGGGGCCCGCCCC.CGCTGCCCCT.g > 1:2226333/1‑101 (MQ=14)
cctGACCGCCGGGGGCCCCAAA.GGCC.CT.CGGCCAGCGCCCGCCCCGCCCATGGCGGGGG.CTTTTGCGCCGCCCGGGGCGGGGGCCGGGCCC.TCCGGCGCCt > 2:2168344/3‑101 (MQ=2)
cGTGCCCGCCGGGGG.CCCAAA.GCCC.CT.CGGCCAGCGCCCGCCCCGCCCATGGCGGGCG.CTTCT.CGCCCGCCGGGGCGGGCGCCGGCCTC.TGCTGCGCCT.gg < 2:105684/101‑1 (MQ=255)
gccccgccgAGGC.CCCAAG.GCCC.CT.CGGCCAGCCCCCGCCCCGCCCATGGCGGGCG.CTTCT.CGCCCGCCGGGGCGGGCGCCGGCCTC.TGCTGCGCCT.gggg < 1:4090030/98‑1 (MQ=14)
ccccgggggg.CCCAAG.GCCC.CT.GGCCCGGCGCCCGCCCCGCCGATGGGGGGCG.CTTCT.CCCCCGCCGGGGCGGGCGCCGGCCTC.TGCTGCGCCT.GGGGaaa < 1:3859189/94‑1 (MQ=17)
cccccgAGGC.CCCAAA.GGCC.CC.CGCCCGCCCCCCGCCCCGCCCATGGCGGGCG.CTTCT.CGCCCGCCGGGGGGGGCGCCGGCCTC.TGCTGCGCCT.GGGGaaa < 2:4350814/98‑1 (MQ=17)
cgccgGGGC.CCAAAA.GCCC.CC.CGGCCAGCGCCCGCCCCGCCCATGGCGGGCG.CTTCC.CGCCCGCCGGGGCGGGCGCCGGCCTC.TGCTGCGCCT.GGGGAAAc < 1:178247/101‑1 (MQ=14)
cgccgAGGG.CCAAAA.GCCC.CT.CGGCCGGCGCCCGCCCCGCCCATGGCGGGCG.CTTCT.CGCCCGCGGGGGCGGGCGCCGGCCTC.TGCTGCGCCT.GGGGAAAc < 2:438071/101‑1 (MQ=17)
ccccgGGGC.CCCAAG.GCCC.CT.CGGCCAGCGCCCGCCCCGCCCATGGCGGGCG.CTTCT.CGCCCGCCGGGGCGGGCGCCGGCCTC.TGCTGCGCCT.GGGGAAAc < 1:4865169/99‑1 (MQ=14)
ccccgGGGC.CCCAAG.GCCC.CT.CGCCCCGCCCCCCCCCCGCCCATGGCGGGCG.CTTCT.CGCCCGCCGGGGCGGGCGCCGGCCTC.TGCTGCGCCT.GGGGAAAc < 1:1265759/99‑1 (MQ=14)
gccgggg.CCCAAACGCCC.CT.CGGCCGGCGCCCGCCCCGCCCATGGCGGGCG.CTTCT.CGCCCGCCGGGGCGGGCGCCGGCCTC.TGCTGCGCCT.GGGGAAACg < 1:2067600/97‑1 (MQ=17)
ccgAGGG.CCCAAA.GGCC.CT.CGGCCTGCGCCCGCCCCGCCCATGGCGGGCGCCTTCG.CGCCCCCCGGGCTGGGCGCAGGGCTC.TGCCACACGT.GGGGacggg > 1:3375970/1‑97 (MQ=14)
cgAGGG.CCCAAA.GGCC.CT.CGGCCAGCGCCCGCCCCGCCCATGGCGGGCG.CTTCT.CGCCCGCCGGGGCGGGGGCCGGCCTC.TGCTGCGCCC.GGGGCAACGGt > 1:1113180/1‑101 (MQ=255)
aGGG.CCCAAA.GGCC.CT.CGGCCAGCGCCCGCCCCGCCCATGGCGGGCG.CTTCT.CGCCCGCCGGGGCGGGCGCCGGCCCC.TGCTGCGCCT.CGGGGAACGGtgt > 2:3298983/1‑99 (MQ=255)
ggg.CCCAAA.GGCC.CT.CGGCCAGCGCCCGCCCCGCCCATGGCGGGCG.CTTCT.CGCCCGCCGGGGCGGGGGCCGGCCCC.TGCTGCGCCT.GGGGAAACGGGCtt > 1:2445098/1‑101 (MQ=255)
ggg.CCCAAA.GGCC.CT.CGGCCAGCGCCCGCCCCGCCCATGGCGGGCG.CTTCT.CGCCCGCCCGGGGGGGGGCCGGCCCC.CCCTGCGCCC.GGGGGAACCGGCtt > 2:3543371/1‑101 (MQ=14)
g.CCCAAG.GCCC.CC.CGGCGGGCCCCCCCCCCGCCCATGGCGGGCG.CTTCT.CGCCCGCCGGGGCGGGCGCCGGCCTC.TGCTGCGCCT.GGGGAAACGGTCTTgg < 2:448316/101‑1 (MQ=17)
g.CCCAAA.GGCCGCC.CGGCCAGCGCCCGCCCCGCCCCTGGCGGGCG.CTTCT.CGCCCGCCGGGCCGGGCGCCGGCCTC.TGTTGTGCCTCGCGGAAACGGTCtt < 2:4725796/101‑1 (MQ=11)
g.CCCAAA.GGCC.CT.CGGCCAGCGCCCGCCCCGCCCATGGCGGGCG.CTTCT.CGCCCGCCGGGGCGGGCGCCGGCCTC.TGCTGCGCCT.GGGGAAACGGGCTTgg > 1:4234290/1‑101 (MQ=255)
ggccAAA.CGCC.CTCCGCCCAGCGCCCGCCCCGCCCGTGGGGGGCG.CTTCT.CGCCCGCGGGGGCGGGCGCCGGCCTC.TGCTGCGCCT.GGGGAAACGGTCTTg < 2:2099481/99‑1 (MQ=17)
cccAAA.GGCC.CT.CGGCCAGCGCCCGCCCCGCCCATGGCGGGCG.CTTCT.CGCCCGCCGGGGCGGGGGCCGGCCTC.TGCCGCGCCC.CGGGAAACCGGCTTGGc > 2:1433028/1‑101 (MQ=14)
gctgcagccc.cG.CGGCCGGCGCCCGCCCCGCCCATGGCGGGCG.CTTCT.CGCCCGCCGGGGCTGGCGCCGGCCTC.TGGTGTGCTT.GGGGATGCGGTCGTgct < 1:2623582/93‑3 (MQ=17)
caaagggCC.CT.CGGCCGGCCCCCGCCCCGCCCATGGGGGGCG.CTTCT.CGCCCGCCGGGGCGGGCGCCGGCCTC.TGCTGCGCCT.GGGGAAACGGTCTTGGCa < 2:3625302/96‑1 (MQ=18)
cAAA.GGCC.CT.CGGCCAGCGCCCGCCCCGCCCATGGCGGGCG.CTTCT.CGCCCGCCGGGGCGGGGGCCGGCCTC.TGCTGCGCCT.GGGGGAACGGTCTTGGCAc > 1:3180409/1‑101 (MQ=255)
aaa.GGCC.CT.CGGCCAGCGCCCGCCCCGCCCATGGCGGGCG.CTTCT.CGCCCGCCGGGGCGGGGGCCGGCCTC.CGCTGCGCCC.GGGGGAACGGGCTTGGCAcc > 1:2559885/1‑101 (MQ=17)
aagggCC.CG.CGGCAAGCGCCCCCCCCGCCCAGGGCGGGCG.CTTCT.CGCCCGCGGGGGCGGGCGCCGGCCTC.TGCTGCGCCT.GGGGAAACGGTCTTGGCAcc < 1:2938053/98‑1 (MQ=18)
aagggCC.CC.CGGCCGGCCCCCCCCCCGCCCATGGCGGGCG.CTTCT.CGCCCGCCGGGGCGGGCGCCGGCCTC.TGCTGCGCCT.GGGGAAACGGTCTTGGCAcc < 2:2893305/98‑1 (MQ=18)
aaggccc.cT.CGGCAGGCGCCCGCCCCGCCCAGGGCGGGCG.CTTCT.CGCCCGCCGGGGCGGGCGCCGGCCTC.TGCTGCGCCT.GGGGAAACGGTCTTGGCAcc < 2:4896822/96‑1 (MQ=18)
aa.GGCC.CT.CGGCCAGCGCCCGCCCCGCCCATGGCGGGCG.CTTCT.CGCCCGCCGGGGGGGGGGCCGGCCCCTTGCCG.GCCT.GGGGGAACGGTCCTGGCAccc > 2:2411259/1‑100 (MQ=14)
a.GGCC.CT.CGGCCAGCGCCCGCCCCGCCCATGGCGGGCG.CTTCT.CGCCCGCCGGGGCGGGCGCCGGCCTC.TGCTGCGCCT.GGGGGAACGGGCTTGGCACCGc > 2:1249362/1‑101 (MQ=255)
ggCC.CC.CGGCCAGCGCCCGCCCCGCCCATGGCGGGCG.CTTCT.CGCCCGCCGGGGGGGGCGCCGGCCTC.TGCTGCGCCT.GGGGAAACGGTCTTGGCACCGcc < 2:2960883/101‑1 (MQ=255)
gCC.CT.CGGCCAGCGCCCGCCCCGCCCATGGCGGGCG.CTTCT.CGCCCGCCGGGGCGGGCGCCGGCCTC.TGCTGCGCCT.GGGGGAACGGTCTTGGCACCGccc > 1:3770067/1‑101 (MQ=255)
gCC.CT.CGGCCAGCGCCCGCCCCGCCCATGGCGGGCG.CTTCT.CGCCCGCCGGGGCGGGCGCCCGCCCC.CGCGGCGCCC.GGGGGAACGGGCTTGGCCCCGccc > 1:46698/1‑101 (MQ=17)
ccccggggCCGGCCCCCGCCCCGCCCATGGGGGGCG.CTTCC.CGCCCGCCGGGGCGGGCGCCGGCCTC.TGCTGCGCCT.GGGGAAACGGTCTTGGCACCGccc < 1:1942165/95‑1 (MQ=18)
c.cT.CGCCCGGCGCCCGCCCCGCCCATGGCGGGCG.CTTCT.CGCCCGCCGGGGCGGGCGCCGGCCTC.TGCTGCGCCT.GGGGAAACGGTCTTGGCACCGCCCgg < 2:111952/101‑1 (MQ=255)
gggCCAGCCCCCGCCCCGCCCATGGCGGGCT.CTTCT.CGCCCGCCGGGGCGGGCGCCGGCCTC.TGCTGCGCCT.GGGGAAACGGTCTTGGCACCGCCCGGGCt < 2:46513/100‑1 (MQ=255)
cGGCCAGCGCCCGCCCCGCCCATGGCGGGCG.CTTCT.CGCCCGCCGGGGCGGGCGCCGGCCTC.TGCTGCGCCT.GGGGAAACGGGCTTGGCACCGCCCGGGcc > 2:2434724/1‑100 (MQ=255)
gCCCGCGCCCGCCCCCCCCATGGCGGGCG.CTTCT.CGCCCGCCGGGGCGGGCGCCGGCCTC.TGCTGCGCCT.GGGGAAACGGTCTTGGCACCGCCCGGGCTcc < 1:2282411/101‑1 (MQ=255)
|
ATTCGCGCAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGG.CCCAAA.GGCC.CT.CGGCCAGCGCCCGCCCCGCCCATGGCGGGCG.CTTCT.CGCCCGCCGGGGCGGGCGCCGGCCTC.TGCTGCGCCT.GGGGAAACGGTCTTGGCACCGCCCGGGCTCCGG > NC_014034/3068063‑3068262
Base quality scores:
ATCG
< 3 ≤
ATCG
< 15 ≤
ATCG
< 22 ≤
ATCG
< 32 ≤
ATCG
< 40 ≤
ATCG
|