| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 1,255,899 | 5 bp→CCCCC | 100% | intergenic (+69/+169) | RCAP_rcc01184 → / ← RCAP_rcc01185 | CsbD family protein/methyl‑accepting chemotaxis sensory transducer |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 1,255,899 | 0 | T→C | 100.0% | 74.1 | 31 | intergenic (+69/+173) | RCAP_rcc01184/RCAP_rcc01185 | CsbD family protein/methyl‑accepting chemotaxis sensory transducer |
| Reads supporting (aligned to +/- strand): new base (11/20): ref base (0/0): total (11/20) | ||||||||||
| * | NC_014034 | 1,255,900 | 0 | G→C | 100.0% | 74.3 | 31 | intergenic (+70/+172) | RCAP_rcc01184/RCAP_rcc01185 | CsbD family protein/methyl‑accepting chemotaxis sensory transducer |
| Reads supporting (aligned to +/- strand): new base (11/20): ref base (0/0): total (11/20) | ||||||||||
| * | NC_014034 | 1,255,901 | 0 | G→C | 100.0% | 75.8 | 32 | intergenic (+71/+171) | RCAP_rcc01184/RCAP_rcc01185 | CsbD family protein/methyl‑accepting chemotaxis sensory transducer |
| Reads supporting (aligned to +/- strand): new base (11/21): ref base (0/0): total (11/21) | ||||||||||
| * | NC_014034 | 1,255,902 | 0 | T→C | 100.0% | 75.7 | 32 | intergenic (+72/+170) | RCAP_rcc01184/RCAP_rcc01185 | CsbD family protein/methyl‑accepting chemotaxis sensory transducer |
| Reads supporting (aligned to +/- strand): new base (11/21): ref base (0/0): total (11/21) | ||||||||||
| * | NC_014034 | 1,255,903 | 0 | A→C | 100.0% | 74.0 | 31 | intergenic (+73/+169) | RCAP_rcc01184/RCAP_rcc01185 | CsbD family protein/methyl‑accepting chemotaxis sensory transducer |
| Reads supporting (aligned to +/- strand): new base (11/20): ref base (0/0): total (11/20) | ||||||||||
AGGGGTGCCGGACCGGAACCGGGGGCCTTCGG....CTG.TCTCGGTCCGCCCGAAGAGGGGGGGCGCTGTGGTAC..CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAA > NC_014034/1255834‑1255979
|||||
aGGGGTGCCGGACCGGAGCCGGGGGCTTTCGGGCCCCCGCTTTCGGTCCGGCCGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCGCCGGGat < 2:587429/101‑1 (MQ=0)
gCCGGACCGGAACCGGGGGCCTTCGGGCCCCCGCTTTCGGTCCGCCCGAAGAGGGGGGGCGCTGCCCCCCCTCCCTGCGGGGCCCCCCCCCGGGTATTTcc > 1:3072193/1‑101 (MQ=2)
cccccgctttcGGTCCGCCCGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGcgcg < 1:2176047/92‑1 (MQ=17)
ccccgctttcGGTCCGCCCGAAGAGGGGGGGCGCTTCCCCCCGTACCTGCGGGACTCCCCCCGGGATGTTTCCGCCGAGTGGAAAAGAACCCGGGGCGCgg > 2:2406975/9‑101 (MQ=9)
cgctttcGGTCCGCCCGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCtt < 1:4393825/96‑1 (MQ=18)
gctttcGGTCCTCCCGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCttt < 1:1870925/97‑1 (MQ=17)
gctttcGGTCCGCCCGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCttt < 1:245022/97‑1 (MQ=18)
gctttcGGTCCGCCCGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCttt > 1:3513186/5‑101 (MQ=18)
tttcGGTCCGCCCGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCa > 2:1754781/3‑101 (MQ=18)
ttcGGTCCGCCCGAAGAGGGGGGGCGCGGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCAc < 2:2679468/100‑1 (MQ=18)
tcGGTCCGCCCGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCAcc > 2:2435586/1‑101 (MQ=18)
tcGGTCCGCCCGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCAcc < 1:2051458/101‑1 (MQ=18)
ctgTCCGCCCGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCt > 2:2083498/3‑101 (MQ=18)
ggTCCGCCCGAAGAGGGGGGGCGCTGCCCCNCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCtt < 1:2354761/101‑1 (MQ=21)
ggTCCGCCCGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCtt > 2:3428714/1‑101 (MQ=18)
ggTCCGCCCGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCtt < 1:92121/101‑1 (MQ=18)
ggTCCGCCCGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCtt > 1:1066288/1‑101 (MQ=18)
ggTCCGCCCGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCtt < 1:16308/101‑1 (MQ=18)
ggTCCGCCCGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCtt > 1:2037799/1‑101 (MQ=18)
ggTCCGCCCGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCtt > 1:2264675/1‑101 (MQ=18)
gTCCGCCCGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTg > 1:2940988/1‑101 (MQ=18)
gTCCGCCCGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTg < 1:4460789/101‑1 (MQ=18)
tCCGCCCGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTgg < 1:3094146/101‑1 (MQ=18)
tCCGCCCGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTgg < 1:3689456/101‑1 (MQ=18)
ccGCCCGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTggg > 2:2001218/1‑101 (MQ=18)
ccGCCCGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTggg < 2:4297639/101‑1 (MQ=18)
cGCCCGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGc < 2:1346129/101‑1 (MQ=18)
cccGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCa < 1:2015757/101‑1 (MQ=18)
ccGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCaa < 2:1860024/101‑1 (MQ=18)
ccGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCaa < 2:2376940/101‑1 (MQ=18)
cGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCaaa < 2:1119881/101‑1 (MQ=18)
cGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCaaa < 1:627349/101‑1 (MQ=18)
cGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCaaa < 1:4952804/101‑1 (MQ=18)
cGAAGAGGGGGGGCGCTGCCCCCCGTCCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCaaa < 2:380016/101‑1 (MQ=18)
|||||
AGGGGTGCCGGACCGGAACCGGGGGCCTTCGG....CTG.TCTCGGTCCGCCCGAAGAGGGGGGGCGCTGTGGTAC..CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAA > NC_014034/1255834‑1255979
Base quality scores:
ATCG
< 3 ≤
ATCG
< 20 ≤
ATCG
< 29 ≤
ATCG
< 34 ≤
ATCG
< 40 ≤
ATCG
|