BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1396201	225 (0.900)	65 (0.260)	15/140	23.0	0.21	coding (83/1578 nt)	RCAP_rcc01307	hypothetical protein
*	?	NC_014034	1397631 =	266 (0.740)	65 (0.260)	15/140	23.0	0.21	coding (1513/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.


CCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCG...........................................................................  >  NC_014034/1396155‑1396201


.............................................................................CGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAGAGTTCC  >  NC_014034/1397631‑1397675


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ttttccagcgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGT                       >  1:1327544/11‑101 (MQ=255)


ttttccagcgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGT                       >  2:244219/11‑101 (MQ=255)


  ttccagcgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGG                     >  2:1560072/9‑101 (MQ=255)


   tccagcgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGA                    >  1:5319361/8‑101 (MQ=255)


    ccagcgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGAT                   >  2:6448120/7‑101 (MQ=255)


    ccagcgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGAT                   >  1:4983926/7‑101 (MQ=255)


    ccagcgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGAT                   >  2:4889469/7‑101 (MQ=255)


     cagcgGCGTCGCCCCCCCCGCGGGGGCGTGGATCGAACCCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATC                  <  1:3903446/96‑1 (MQ=255)


     cCGCGGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATC                  <  2:854258/100‑1 (MQ=255)


      ggcgGCGTCGCCCCCCCCGGGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCG                 <  1:6683736/97‑1 (MQ=255)


      agcgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCG                 >  1:6548464/5‑101 (MQ=255)


      agcgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCG                 >  2:6312567/5‑101 (MQ=255)


      agcgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCG                 >  1:220514/5‑101 (MQ=255)


      CGCGGCGCCGCCCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCG                 <  2:1060523/101‑1 (MQ=255)


       gcgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGA                >  2:2081279/4‑101 (MQ=255)


        cgGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGCGGAGCGAA               >  1:4073057/3‑101 (MQ=255)


         gGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA              >  2:2506598/2‑101 (MQ=255)


         gGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA              >  1:3890079/2‑101 (MQ=255)


         gGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA              >  2:5567402/2‑101 (MQ=255)


         gGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA              >  2:6019975/2‑101 (MQ=255)


         gGCGTCGCCCCCCCCGCGGGGGCGTGGATCGAACCCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAA              <  2:94005/100‑1 (MQ=255)


          GCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC             >  2:2228601/1‑101 (MQ=255)


          GCGTCGCCCCCCCCGCGGGGGCGTGGATCGAACCCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC             <  1:1889607/101‑1 (MQ=255)


          GCGTCGCCCCCCCCGCGGGGGCGTGGATCGAACCCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC             <  2:6548133/101‑1 (MQ=255)


          GCGTCCCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC             <  1:5799322/101‑1 (MQ=255)


           CGTCGCCCCCCCCGCGGGGGCGTGGATCGAACCCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACa            <  2:5494299/101‑2 (MQ=255)


            GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACaa           >  1:2081863/1‑99 (MQ=255)


            GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACaa           >  1:2369649/1‑99 (MQ=255)


            GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACaa           >  2:3814982/1‑99 (MQ=255)


            GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACaa           >  2:1342874/1‑99 (MQ=255)


            GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGGGGATCGAAACaa           >  1:5698469/1‑99 (MQ=255)


             TCGCTCCCCCCGCGGGGGCGTGGATCGAACCCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAC          <  2:5554281/101‑1 (MQ=255)


             TCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAC          >  1:970936/1‑101 (MQ=255)


              CGCTCCCCCCGCGGGGGCGTGGATCGAACCCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACt         <  2:2684399/101‑2 (MQ=255)


              CGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACt         >  2:5814480/1‑100 (MQ=255)


              CGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACt         >  1:452620/1‑100 (MQ=255)


              CGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACt         >  2:3577967/1‑100 (MQ=255)


              CGCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGCCGCTCCCCCCGCGGGGGCGTGGATCGAAccaact         >  2:5510743/1‑95 (MQ=255)


              CGCCCCCCCCGCGGGGGCGTGGATCGAACCCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACt         <  1:3472706/101‑2 (MQ=255)


              CGCCCCCCCCGCGGGGGCGTGGATCGAACCCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACt         <  2:3980404/101‑2 (MQ=255)


              CGCCCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACt         <  2:110320/101‑2 (MQ=255)


               GCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCCCGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGCGGATCGAAACAACtg        >  1:5448388/1‑99 (MQ=255)


               GCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACtg        >  1:7041709/1‑99 (MQ=255)


               GCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACtg        >  2:6271639/1‑99 (MQ=255)


               GCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACtg        >  1:3223950/1‑99 (MQ=255)


               GCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACtg        >  1:4920666/1‑99 (MQ=255)


               GCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACtg        >  1:4454984/1‑99 (MQ=255)


               GCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACtg        >  2:2365182/1‑99 (MQ=255)


               GCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACtg        >  2:1645191/1‑99 (MQ=255)


               GCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACtg        >  2:2007162/1‑99 (MQ=255)


               GCTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACACCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGTGGGCGTGGATCGAAACAACtg        >  1:6952132/1‑99 (MQ=255)


                ccCCCCCCGCGGGGGCGTGGATCGAACCCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGA       <  1:1212200/99‑1 (MQ=255)


                ccCCCCCCGCGGGGGCGTGGATCGAACCCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGA       <  2:1082460/99‑1 (MQ=255)


                ccCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGA       <  2:5975936/99‑1 (MQ=255)


                CTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGA       >  2:1797842/1‑101 (MQ=255)


                CTCCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGA       >  2:1825672/1‑101 (MQ=255)


                 cCCCCCCGCGGGGGCGTGGATCGAACCCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGAc      <  1:759776/100‑2 (MQ=255)


                 cCCCCCCGCGGGGGCGGGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGAc      <  2:1613899/100‑2 (MQ=255)


                  CCCCCCGCGGGGGCGTGGATCGAACCCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGAcc     <  1:4884015/101‑3 (MQ=255)


                  CCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGAcc     >  1:2781752/1‑99 (MQ=255)


                  CCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGAcc     >  1:7077206/1‑99 (MQ=255)


                  CCCCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGAcc     <  2:3556404/101‑3 (MQ=255)


                    CCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGAcccg   >  2:5730282/1‑97 (MQ=255)


                    CCCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGAcccg   <  2:7069322/101‑5 (MQ=255)


                     CCCGCGGGGGCGTGGATCGAAACCCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAACTGAcccgg  >  2:3201613/1‑96 (MQ=255)


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CCGCCACGCTGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCG...........................................................................  >  NC_014034/1396155‑1396201


.............................................................................CGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTACAGAGTTCC  >  NC_014034/1397631‑1397675

Base quality scores:


ATCG

< 3 ≤


ATCG

< 16 ≤


ATCG

< 25 ≤


ATCG

< 33 ≤


ATCG

< 39 ≤


ATCG