New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1723333 =	259 (0.720)	35 (0.100)	3/200	39.0	0.11	intergenic (‑588/+840)	infC/fpr	translation initiation factor IF/ferredoxin‑‑NADP reductase
	?	NC_014034	= 1723929	281 (0.790)					intergenic (‑1184/+244)	infC/fpr	translation initiation factor IF/ferredoxin‑‑NADP reductase
Rejected: Position hash score below cutoff.

TTCAGCGGCCGGGGCTTCGACAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGG...................................................................................................  <  NC_014034/1723392‑1723333 ............................................................AGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGC  <  NC_014034/1723929‑1723831                                                                                                                                                                 TTCAGCGGCCGGGGCTTCGACAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTACGACAGCCGGAGCGGCTTCCGCAGCCCGGGCTTCAG                                                            >  1:5054549/1‑101 (MQ=0)  TCAGCGGCCGGGTCTTCGACAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGC                                                           <  2:2125283/101‑1 (MQ=0)              GCTTCGACAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTC                                               <  2:396516/101‑1 (MQ=32)              GCTTCGACAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTC                                               <  2:3464204/101‑1 (MQ=32)               CTTCGACAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCG                                              <  1:2007788/101‑1 (MQ=32)               CTTCGACAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCG                                              <  1:7006239/101‑1 (MQ=32)                TTCGACAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCGTCGA                                             >  2:1437255/1‑101 (MQ=16)                 TCGACAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGcc                                            >  2:4308725/1‑99 (MQ=18)                 TCGACAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGAC                                            <  2:4329391/101‑1 (MQ=32)                  CGACAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACA                                           <  2:3526747/101‑1 (MQ=32)                  CGACAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACA                                           <  1:5527893/101‑1 (MQ=32)                  CGACAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACA                                           >  2:6996162/1‑101 (MQ=33)                  CGACAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACA                                           <  2:642577/101‑1 (MQ=32)                  CGACAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCCTCGACA                                           >  1:4928740/1‑101 (MQ=18)                   gcCAGCCGGCGCCGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAG                                          <  1:2265658/99‑1 (MQ=0)                   GACAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAG                                          <  1:3523170/101‑1 (MQ=32)                   GACAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAG                                          >  1:5931733/1‑101 (MQ=32)                   GACAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAG                                          <  1:1343680/101‑1 (MQ=32)                   GACAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAG                                          >  2:1189784/1‑101 (MQ=32)                    gaAGCCGGAGCGGCTTCCGGAGCTGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGC                                         <  1:4231481/99‑1 (MQ=255)                    cCAGCGGGGGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGC                                         <  1:1188938/100‑1 (MQ=0)                    ACAGCCGGGCCGGGTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGC                                         <  1:1749314/101‑1 (MQ=2)                    ACAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCGTCGgaagc                                         >  2:4387225/1‑96 (MQ=12)                     CAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCC                                        <  1:2706680/101‑1 (MQ=32)                      tcCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTGCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCG                                       <  1:1969268/99‑1 (MQ=17)                      AGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGGCAGCCG                                       >  2:3505994/1‑101 (MQ=17)                      AGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCG                                       >  2:4328618/1‑101 (MQ=32)                       GCCGGGGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGG                                      <  1:926450/101‑1 (MQ=1)                        CCGGAGCCGCTTCCGCAGCTGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGA                                     <  1:2749597/101‑1 (MQ=0)                         CGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGGCGGAGCTTCGGCAGGCGGAG                                    >  2:2781182/1‑101 (MQ=255)                          GGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGTGC                                   >  2:1188890/1‑101 (MQ=17)                                     CGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAc                        >  2:5787552/1‑100 (MQ=1)                                        AGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGTGCAGCTTCCGCAGCCGGGGCTTCAGCCGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCG                     <  1:6324644/101‑1 (MQ=0)                                        AGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACGGCCGGAGCAGCTTCCGCAGCCG                     >  2:7048926/1‑101 (MQ=1)                                                           GGAGCTTCGACAGCCGGTGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGTGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGC  <  2:4638993/101‑1 (MQ=0)                                                                                                                                                                 TTCAGCGGCCGGGGCTTCGACAGCCGGAGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGG...................................................................................................  <  NC_014034/1723392‑1723333 ............................................................AGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGC  <  NC_014034/1723929‑1723831 Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 24 ≤  ATCG  < 32 ≤  ATCG  < 41 ≤  ATCG