New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1723414 =	212 (0.670)	11 (0.030)	2/176	38.0	0.05	intergenic (‑669/+759)	infC/fpr	translation initiation factor IF/ferredoxin‑‑NADP reductase
	?	NC_014034	= 1723929	248 (0.690)					intergenic (‑1184/+244)	infC/fpr	translation initiation factor IF/ferredoxin‑‑NADP reductase
Rejected: Position hash score below cutoff.

CTTCAGCGGCCGGAGCTTCCGCAGCCGGGGCAGCTTCCGCAGCCGGGGC...............................................................................................................  <  NC_014034/1723462‑1723414 .............................................................AGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGC  <  NC_014034/1723929‑1723831                                                  ||||||||||||                                                                                                    CTTCAGCGGCCGGAGCTTCGGCAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCA                                                             >  1:6387560/1‑101 (MQ=18)                    gcCAGCCGGCGCCGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAG                                          <  1:2265658/99‑1 (MQ=0)                     cCAGCGGGGGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGC                                         <  1:1188938/100‑1 (MQ=0)                      CAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCC                                        <  1:148434/101‑1 (MQ=32)                      CAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCC                                        <  2:1949301/101‑1 (MQ=32)                      CAGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCACCGGCCGGAGCTTCGACAGCC                                        <  1:6381882/101‑1 (MQ=17)                       AGCCGGGGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCG                                       <  1:4308947/101‑1 (MQ=32)                        GCCGGGGCGGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGG                                      <  1:926450/101‑1 (MQ=1)                                      CGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAc                        >  2:5787552/1‑100 (MQ=1)                                         AGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGTGCAGCTTCCGCAGCCGGGGCTTCAGCCGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCG                     <  1:6324644/101‑1 (MQ=0)                                         AGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACGGCCGGAGCAGCTTCCGCAGCCG                     >  2:7048926/1‑101 (MQ=1)                                                            GGAGCTTCGACAGCCGGTGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGTGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGC  <  2:4638993/101‑1 (MQ=0)                                                  ||||||||||||                                                                                                    CTTCAGCGGCCGGAGCTTCCGCAGCCGGGGCAGCTTCCGCAGCCGGGGC...............................................................................................................  <  NC_014034/1723462‑1723414 .............................................................AGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGCTTCGACAGCCGGAGCAGCTTCCGCAGCCGGGGCTTCAGCGGCCGGAGC  <  NC_014034/1723929‑1723831 Base quality scores:  ATCG  < 3 ≤  ATCG  < 19 ≤  ATCG  < 25 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG